Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.0  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   6.6  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   8.7  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    23   8.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = -3

Query: 708  QKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKF---INIPN 538
            Q+E   DK  YL     Y+DE   E + + +       +L  A W +    +   +N+  
Sbjct: 3013 QREFNFDKNDYLKVFINYDDEVEPEVEPEVVIERKRFLQLQFAFWSLYNEIYSEKMNVIP 3072

Query: 537  PHGLQYGWQWLASFINLKPEPDISATLLYDFFTV 436
               L     +LA  I +K  PD+ A+  +D  +V
Sbjct: 3073 LEQLMNTGSYLAKKIKVK-NPDMIASSGFDIVSV 3105


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 531 GLQYGWQWLASFINLKPEPDISATLLYDFF 442
           G   GW +LASF+   P   I+A++   F+
Sbjct: 161 GFTLGWNYLASFLATYPLELITASICLQFW 190


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 274 SSQWFVTIRYMVNISQLFVNL-SNPIMKY 191
           SS W +TIR +++  Q   N+ +N +MKY
Sbjct: 125 SSAWPITIRNLIHRHQPLSNITNNELMKY 153


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 540 NPHGLQYGWQWLASFINLKPEPDIS-ATLLYDFFTVCGSKFLLHYKI 403
           NP+GL+YG    +S I +  + +I    +  D F +  + +++H  I
Sbjct: 118 NPYGLRYGEITASSLIKVDEDGNIKHPGVTGDVFGINRAGYVIHSAI 164



 Score = 20.6 bits (41), Expect(2) = 8.8
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -3

Query: 426 KFLLHYKIQFIKLIKLISTDYLEVLQNIDEGGPKT 322
           K ++H    +   +  +   +LE+ Q   + GP T
Sbjct: 172 KSIMHNHYPYAAGVSCVKHGFLELAQTSHQSGPVT 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,690
Number of Sequences: 5004
Number of extensions: 72899
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)