Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k09r
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517... 63 2e-10
01_01_1233 + 10003713-10004369,10004772-10004851,10004928-100050... 32 0.42
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 29 3.9
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 29 5.2
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 28 6.9
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064... 28 6.9
01_07_0119 + 41179458-41179533,41180455-41180921 28 9.1
>02_04_0466 -
23149906-23150046,23150129-23150279,23151684-23151785,
23151893-23152110,23152203-23152325,23152863-23152991,
23153191-23153274,23154009-23154104,23154735-23154816,
23155047-23155117,23155269-23155363,23156090-23156276,
23156586-23156757,23157800-23157948,23158578-23158701,
23158836-23158991,23159101-23159247,23160470-23160489
Length = 748
Score = 63.3 bits (147), Expect = 2e-10
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Frame = -3
Query: 690 DKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIPNPHGLQYGWQ 511
++++Y GY + G +E + +L ++ +L A M + + +PHGL GW+
Sbjct: 466 NRDYYRLIGYQ-EENGQLESTESYLTYVAAYVKLYAA---MIQTEIRGVRHPHGLAEGWK 521
Query: 510 WLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDYLEVLQNIDEGG 331
WLA F+N P +A L+ F V G Y QF+KL+ +I +L L+ E G
Sbjct: 522 WLAMFLNTLPATTATACALHAFLKVAGFALHKKYGSQFMKLLDVILRCFLPALK---EQG 578
Query: 330 PKTRLEVL--LQNILKTG-HIDPPSG 262
+ + E LQN L +++ P G
Sbjct: 579 SRIQAEAASNLQNYLTDKVYLEEPEG 604
>01_01_1233 +
10003713-10004369,10004772-10004851,10004928-10005011,
10005012-10005190,10005347-10005391,10006148-10006335
Length = 410
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 465 ATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDYLEVLQNIDEGGPKTRLEVLLQN 298
A L YDF + H + + +K++S+ YL L+NID P R V+L++
Sbjct: 232 AELSYDFHSDTFRARRTHSSTKILYPLKIVSSSYLTGLKNIDRYPPHGRRTVVLED 287
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 651 DEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFIN--IPNPHGLQYGWQWLASFINLKP 481
+ ++ +Q+ ++R + W ST + +N +P+ Q+GW WL ++ KP
Sbjct: 235 EASLISRQEAAVRRERALAYAFSHQW-KSTSRSVNPMFVDPNNPQWGWSWLERWMAAKP 292
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.7 bits (61), Expect = 5.2
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Frame = -3
Query: 732 LFSSHVMP-QKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSG---IFRLICAIWIMS 565
L SHV P Q QTDK YL R Y Y++ FL ++ F+LI A+
Sbjct: 83 LEGSHVWPFQVWLQTDKAAYLLRQYFYSNLHDRLSTRPFLSKIEKKWLAFQLIHAVEQSH 142
Query: 564 TPKF----INIPNPHGLQYGWQWLASFINLKPE--PDISATLLYDFFTVCGSK 424
+ I N + W +LA F + KP PD + FF G +
Sbjct: 143 SKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPDDDPSDFSFFFDTGGRR 195
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 236 VHHISDCNKPLGGSMCPVFSMFCKSTSSLVFGPPSSMFC 352
V + D N GG + F S FG PS FC
Sbjct: 39 VFNFGDSNSDTGGRVAAGFESIAPPYGSTFFGSPSGRFC 77
>01_06_1774 +
39803747-39803825,39805338-39805555,39805856-39806436,
39807239-39808136
Length = 591
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 261 NHWE---DQCVRSSVCFVRVLPVLFSALLHQCFVKLPNNLC*LILLT 392
N WE Q + C +R++PV S +L CFV L +IL T
Sbjct: 314 NSWELCNVQQIEEVKCLIRIVPVCISGVL--CFVALAQQFTYIILQT 358
>01_07_0119 + 41179458-41179533,41180455-41180921
Length = 180
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 663 YTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPK 556
Y +DEGV++ D K ++G LI A ++M TP+
Sbjct: 122 YMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPR 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,489
Number of Sequences: 37544
Number of extensions: 404498
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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