Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09r
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6885| Best HMM Match : GLE1 (HMM E-Value=0.00012)                   37   0.020
SB_49435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   5.3  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)                   28   9.3  
SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_6885| Best HMM Match : GLE1 (HMM E-Value=0.00012)
          Length = 150

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
 Frame = -3

Query: 738 VPLFSSHVMPQKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSG----IFRLICAIWI 571
           VPL+    +P+ +G +D ++Y   GY  + + + E QDK+LKRM+G    I  ++ A ++
Sbjct: 59  VPLY----IPKAQGTSDIDYYKGLGYQISGDQI-EAQDKYLKRMTGTVIYISLMVLAFYM 113

Query: 570 -MSTPKFINIP 541
            +ST   I +P
Sbjct: 114 DVSTNSEITLP 124


>SB_49435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 741 AVPLFSSHVMPQKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMST 562
           +VP+ S         Q  KE Y + G +      +EK++    + SGIF +  A +++ T
Sbjct: 3   SVPIGSQQFARIISNQMRKENYNATGSSVLQNERLEKEEFKAGQPSGIFNMASAAFLLFT 62

Query: 561 PK 556
           PK
Sbjct: 63  PK 64


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 548  FINLGVLIIQIAQMSLKIPDILFKNLSCFSTTPSSLYVYPLDK*N 682
            F   G+  + +   +L    I     SCF   P  + +YPLDK N
Sbjct: 1628 FFRGGIACVHVYSTALNAYQISAIKKSCFRALPVVVAIYPLDKSN 1672


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 702 EGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLI 586
           E   D+ F++  GY  +DEG+ E ++       GI +LI
Sbjct: 11  EDDEDEGFFVPHGYLSDDEGIEEDEEFVHSSSMGINKLI 49


>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
          Length = 628

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 552 INIPNPHGLQYGWQWLASFINLKPEPDIS 466
           +N  NPH     WQW  S     P+PD++
Sbjct: 14  VNPANPHCRSTFWQWRESRAPNHPQPDLN 42


>SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 708 QKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPK 556
           +K G     + LS+   YND    EK+ +    +S   RL C  ++  TP+
Sbjct: 184 EKTGLVRVPYVLSKDIHYNDYSKTEKKIRIDDAISTFNRLSCIRFVEKTPE 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,385,295
Number of Sequences: 59808
Number of extensions: 482416
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)