Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k09r
(749 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030012-1|AAH30012.1| 698|Homo sapiens GLE1 RNA export mediato... 119 1e-26
AL445287-2|CAH71065.1| 698|Homo sapiens GLE1 RNA export mediato... 119 1e-26
AL356481-2|CAH71403.1| 698|Homo sapiens GLE1 RNA export mediato... 119 1e-26
AK222854-1|BAD96574.1| 698|Homo sapiens GLE1-like, RNA export m... 119 1e-26
AL445287-1|CAH71064.1| 659|Homo sapiens GLE1 RNA export mediato... 104 3e-22
AL356481-1|CAH71402.1| 659|Homo sapiens GLE1 RNA export mediato... 104 3e-22
AF058922-1|AAC25561.1| 659|Homo sapiens GLE1 protein. 104 3e-22
AK222842-1|BAD96562.1| 659|Homo sapiens GLE1-like, RNA export m... 103 5e-22
>BC030012-1|AAH30012.1| 698|Homo sapiens GLE1 RNA export
mediator-like (yeast) protein.
Length = 698
Score = 119 bits (286), Expect = 1e-26
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNQQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY---LE 358
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY +E
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIE 657
Query: 357 VLQNIDEGGPKTRLEVLLQNILKTGHIDPPSGLLQSDIW 241
+ + + G RL+ L+ L+ I P G L S W
Sbjct: 658 AITSSGQMGSFIRLKQFLEKCLQHKDIPVPKGFLTSSFW 696
>AL445287-2|CAH71065.1| 698|Homo sapiens GLE1 RNA export
mediator-like (yeast) protein.
Length = 698
Score = 119 bits (286), Expect = 1e-26
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY---LE 358
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY +E
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIE 657
Query: 357 VLQNIDEGGPKTRLEVLLQNILKTGHIDPPSGLLQSDIW 241
+ + + G RL+ L+ L+ I P G L S W
Sbjct: 658 AITSSGQMGSFIRLKQFLEKCLQHKDIPVPKGFLTSSFW 696
>AL356481-2|CAH71403.1| 698|Homo sapiens GLE1 RNA export
mediator-like (yeast) protein.
Length = 698
Score = 119 bits (286), Expect = 1e-26
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY---LE 358
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY +E
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIE 657
Query: 357 VLQNIDEGGPKTRLEVLLQNILKTGHIDPPSGLLQSDIW 241
+ + + G RL+ L+ L+ I P G L S W
Sbjct: 658 AITSSGQMGSFIRLKQFLEKCLQHKDIPVPKGFLTSSFW 696
>AK222854-1|BAD96574.1| 698|Homo sapiens GLE1-like, RNA export
mediator isoform 1 variant protein.
Length = 698
Score = 119 bits (286), Expect = 1e-26
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY---LE 358
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY +E
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIE 657
Query: 357 VLQNIDEGGPKTRLEVLLQNILKTGHIDPPSGLLQSDIW 241
+ + + G RL+ L+ L+ I P G L S W
Sbjct: 658 AITSSGQMGSFIRLKQFLEKCLQHKDIPVPKGFLTSSFW 696
>AL445287-1|CAH71064.1| 659|Homo sapiens GLE1 RNA export
mediator-like (yeast) protein.
Length = 659
Score = 104 bits (250), Expect = 3e-22
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY 364
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDY 652
>AL356481-1|CAH71402.1| 659|Homo sapiens GLE1 RNA export
mediator-like (yeast) protein.
Length = 659
Score = 104 bits (250), Expect = 3e-22
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY 364
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDY 652
>AF058922-1|AAC25561.1| 659|Homo sapiens GLE1 protein.
Length = 659
Score = 104 bits (250), Expect = 3e-22
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQRMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY 364
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDY 652
>AK222842-1|BAD96562.1| 659|Homo sapiens GLE1-like, RNA export
mediator isoform 2 variant protein.
Length = 659
Score = 103 bits (248), Expect = 5e-22
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 705 KEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIP-NPHG 529
KEG +++ GY D V E+QD FLKRMSG+ RL AI + P +PHG
Sbjct: 539 KEGMALEDYQGMLGYQVKDSKV-EQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHG 597
Query: 528 LQYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDY 364
L +GW+WLA +N++P D++ATLL+DF VCG+ + Y++QF K++ LI DY
Sbjct: 598 LNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDY 652
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,349,819
Number of Sequences: 237096
Number of extensions: 2375359
Number of successful extensions: 3452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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