Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132863-6|CAB60577.1|  141|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    28   8.1  

>AL132863-6|CAB60577.1|  141|Caenorhabditis elegans Hypothetical
           protein Y37H2A.10 protein.
          Length = 141

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 610 SFQEFILFFNYTFIIICIPSRQVE 681
           +F  F++F  +TFI  CIP++Q+E
Sbjct: 17  AFSIFLIFIPWTFIHACIPTQQIE 40


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 476 LIYLPLFFMISLQCVGLNFSY 414
           L+Y+PLFF+ +L    +NF Y
Sbjct: 275 LMYIPLFFVFALPLFNINFPY 295


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 603 LTFFSRIYLVFQLHLHHYMYTL*TSRIPY 689
           + F +RI LVF  H+H Y++ +  + I Y
Sbjct: 21  VAFVARIILVFYAHIHDYLFKVNFTDIDY 49


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 550 YKFGGAHYPNSTDESKDT*HSFQEFILFFNYTFII 654
           YK G   YP ST E  +T    ++ ILFF+   ++
Sbjct: 113 YKTGWTRYPFSTSEPPETIDFPRDSILFFDIELVV 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,608
Number of Sequences: 27780
Number of extensions: 397174
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)