BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k09r (749 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132863-6|CAB60577.1| 141|Caenorhabditis elegans Hypothetical ... 31 1.2 Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical pr... 28 6.2 Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical pr... 28 8.1 AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 28 8.1 >AL132863-6|CAB60577.1| 141|Caenorhabditis elegans Hypothetical protein Y37H2A.10 protein. Length = 141 Score = 30.7 bits (66), Expect = 1.2 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +1 Query: 610 SFQEFILFFNYTFIIICIPSRQVE 681 +F F++F +TFI CIP++Q+E Sbjct: 17 AFSIFLIFIPWTFIHACIPTQQIE 40 >Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical protein C31E10.1 protein. Length = 350 Score = 28.3 bits (60), Expect = 6.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 476 LIYLPLFFMISLQCVGLNFSY 414 L+Y+PLFF+ +L +NF Y Sbjct: 275 LMYIPLFFVFALPLFNINFPY 295 >Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical protein B0491.1 protein. Length = 417 Score = 27.9 bits (59), Expect = 8.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 603 LTFFSRIYLVFQLHLHHYMYTL*TSRIPY 689 + F +RI LVF H+H Y++ + + I Y Sbjct: 21 VAFVARIILVFYAHIHDYLFKVNFTDIDY 49 >AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical protein Y57A10A.15 protein. Length = 1072 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 550 YKFGGAHYPNSTDESKDT*HSFQEFILFFNYTFII 654 YK G YP ST E +T ++ ILFF+ ++ Sbjct: 113 YKTGWTRYPFSTSEPPETIDFPRDSILFFDIELVV 147 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,905,608 Number of Sequences: 27780 Number of extensions: 397174 Number of successful extensions: 890 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 890 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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