Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k09r
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00... 60 2e-09
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain... 31 1.1
At3g42600.1 68416.m04422 hypothetical protein 29 2.5
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote... 29 4.4
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel... 29 4.4
At5g48657.1 68418.m06020 defense protein-related weak similarity... 28 5.8
At5g28482.1 68418.m03463 hypothetical protein similar to At2g066... 28 5.8
At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family prot... 28 5.8
At2g12120.1 68415.m01304 hypothetical protein similar to At2g066... 28 5.8
At1g21170.1 68414.m02647 expressed protein 28 5.8
At2g47530.1 68415.m05932 hypothetical protein 28 7.6
At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putat... 28 7.6
>At1g13120.1 68414.m01521 expressed protein contains Prosite
PS00012: Phosphopantetheine attachment site; similar to
GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
from this gene
Length = 611
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = -3
Query: 615 KRMSGIFRLICAIWIMSTPKFINIPNPHGLQYGWQWLASFINLKPEPDISATLLYDFFTV 436
+R+ I RL A+ + + + N N HG+++GW WLA F+N P +AT L F
Sbjct: 459 ERLDSIMRLYGAL-VQTDIRVGNATNVHGIEHGWAWLARFLNKIPANRATATALNSFLQT 517
Query: 435 CGSKFLLHYKIQFIKLIKLISTDYLEVLQ 349
G YK QF+K++ ++ +L+ L+
Sbjct: 518 AGFGLHQRYKSQFLKVVNVVREHFLQKLR 546
>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 898
Score = 30.7 bits (66), Expect = 1.1
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Frame = -3
Query: 744 QAVPLFSSHVMPQKEGQTDKEFYLSRGYTYNDEGVVEKQDKFLKR-MSGIFRLICAIWIM 568
Q + S+ +K D E + +T+ + +EK D +SG +W +
Sbjct: 7 QTCEILPSNKSLRKRLGRDMENHEQTSFTFEIDNFLEKGDAISPIFISGGCEWFIRVWQI 66
Query: 567 STPKFI--NIPNPHGLQYGWQWLA--SFI-------NLKPEPDISATLLYDFFTVCGSKF 421
+ ++PN L+YGW+ SFI L+ ++ + C K
Sbjct: 67 EDHLAVTLSVPNLESLRYGWERRTKYSFIVLNQSGRELERTFEVEGLFCTELLEWCHPKV 126
Query: 420 LLHYKIQFIKL--IKLISTDYLEVLQNIDEGGPKTRLEV 310
+ K+Q + L KLI ++VL+ + EGG T E+
Sbjct: 127 MPTNKLQEVCLENNKLIIEVQVKVLEVVHEGGVTTEKEM 165
>At3g42600.1 68416.m04422 hypothetical protein
Length = 219
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 532 MGVRYVYKFGGAHYPNSTDESKDT*HSFQEFILFFNYTF 648
+GV ++ F HYP T+E++D+ F + I + T+
Sbjct: 129 LGVMFLQLFARHHYPLGTEETRDSCEQFMDEIKQYRPTY 167
>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam domains, PF00560: Leucine
Rich Repeat and PF00069: Protein kinase domain
Length = 940
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 530 PWGLGMFINLGVLIIQIAQMSLKIP 604
P GLG FINL +L+++ Q S IP
Sbjct: 163 PKGLGKFINLTLLVLEANQFSGTIP 187
>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
(CNGC10) (ACBK1) almost identical to CaM-regulated
potassium ion channel (ACBK1) GI:8515883 from
[Arabidopsis thaliana]; contains Pfam domain, PF00520:
Ion transport protein
Length = 706
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = -3
Query: 648 EGVVEKQDKFLKRMSGIFRLICAIWIMSTPKFINIPNPHGLQYGWQWLASFINLKPEPDI 469
+ ++ QD FL+ + IF C + + P F IP ++ + L + +I
Sbjct: 61 KNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARH-------CLTLDSKLEI 113
Query: 468 SATLLYDFFTVCGSKFLLHYKIQF 397
+A+LL T+ + +++H QF
Sbjct: 114 AASLLR---TLIDAFYIIHIVFQF 134
>At5g48657.1 68418.m06020 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 245
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -1
Query: 485 NQNLIYL----PLFFMISLQCVGLNFS 417
NQN+I L PLF ++L CVGL FS
Sbjct: 178 NQNIISLSFINPLFLQLTLLCVGLLFS 204
>At5g28482.1 68418.m03463 hypothetical protein similar to At2g06630,
At2g12120, At1g45090, At2g05470
Length = 231
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 532 MGVRYVYKFGGAHYPNSTDESKDT*HSFQE 621
MG ++ FG HYP T+E++D F E
Sbjct: 141 MGAIFLNLFGRNHYPLGTEETRDLCEEFLE 170
>At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family protein
similar to SP|P40602 Anther-specific proline-rich
protein APG precursor {Arabidopsis thaliana}; contains
Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
Length = 340
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 600 YLTFFSRIYLVFQLHLHHYMY 662
+L F++R+ + F+LH H ++Y
Sbjct: 167 FLKFYTRVCVEFELHFHKFLY 187
>At2g12120.1 68415.m01304 hypothetical protein similar to At2g06630,
At1g45090, At2g05470, At5g28482
Length = 231
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 532 MGVRYVYKFGGAHYPNSTDESKDT*HSFQE 621
MG ++ FG HYP T+E++D F E
Sbjct: 141 MGAIFLNLFGRNHYPLGTEETRDLCEEFLE 170
>At1g21170.1 68414.m02647 expressed protein
Length = 1090
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 525 QYGWQWLASFINLKPEPDISATLLYDFFTVCGSKFLLHYKIQFIKLIKLISTDYL 361
+Y + WL S N + D+ ++ F+ G K L HY LI+ +T+YL
Sbjct: 812 KYKYTWLQSRRNDEDISDLQDLMMS--FSGLGEKVLEHYTFAKANLIRTAATNYL 864
>At2g47530.1 68415.m05932 hypothetical protein
Length = 184
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 677 TCLEGIHIMMKV*LKNKINS*KECQVSLDSSVLFG**APPNL*TYLTPMDYNMDGS 510
T L+G + L +K+N+ C+V L+SS +F P N+ +T + D S
Sbjct: 101 TDLKGYFYFITYGLSHKVNNISSCKVKLESSPVFTCKTPTNVNKGVTGAPLSPDNS 156
>At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 224
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 234 MFTIYLIVTNHWEDQCVRSSVCFVR 308
MF+I L+V NH DQ +R ++ +R
Sbjct: 1 MFSIVLLVVNHSRDQSIRCNIGDIR 25
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,912
Number of Sequences: 28952
Number of extensions: 352830
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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