Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09f
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    32   0.065
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   1.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    28   1.1  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   3.2  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   7.5  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   7.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.9  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 27/98 (27%), Positives = 47/98 (47%)
 Frame = +1

Query: 112 SSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPN 291
           SSY S  DRL   L+R +TS +R +SID  +A    L+ + + +++ L   + E    P+
Sbjct: 568 SSYTSLMDRLINNLSRGLTS-LRAASIDLIIALCKSLQKNEVLQSLSLVKKLSELPFDPS 626

Query: 292 SPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNL 405
           +     ++   + + AK   L +D     L   LG  +
Sbjct: 627 TSRDASVLL--RNLSAKSSALEKDTRRVVLHALLGLTI 662


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 106 KNSSYDSYNDRLGEILNRSITSKMRDSSID---ETLAGFGKLRISALTKAVELSPLVKEA 276
           K + +++ N  +G   + SI S MR    D   E L GF  L  S   ++V LSP+    
Sbjct: 139 KENIFNAPNIIIGPRSDFSINSVMRSILCDITAELLEGFSSLEFSIHARSVILSPITDMP 198

Query: 277 TIGP 288
            + P
Sbjct: 199 HLAP 202


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +1

Query: 289 NSPAKKELIYEE-KQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKS 465
           NS A + +  EE  +I   +   P D+ E+K + +L    +      Q  Q    + ++ 
Sbjct: 4   NSGASESISIEETNRIRISLGLKPLDISEEKPQKELSDASVKSSYVDQEQQAYENWKKQE 63

Query: 466 FEQMICKRAEIMNKCFQKYSEQRERR 543
            E++  K+ E +   F+K  ++ ERR
Sbjct: 64  QEEINRKKEEELKSKFEKLRQKNERR 89


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 245 ALVRADILNLPNPAKVSSILESLI 174
           ALV+ D+  L N +K+S++LES I
Sbjct: 536 ALVKDDVETLCNSSKISALLESSI 559


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +1

Query: 388 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERR 543
           D  YNL      A+  ++ ++ + +S +  + +  E   +  +KY E+R+R+
Sbjct: 8   DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK 59


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +1

Query: 388 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERR 543
           D  YNL      A+  ++ ++ + +S +  + +  E   +  +KY E+R+R+
Sbjct: 8   DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK 59


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 49  ISSNMYI-YKYF*GIHMNSTKNSSYDSYNDRL 141
           IS N+   Y YF G+H+ ST  S+Y     RL
Sbjct: 66  ISKNLGAPYTYFFGLHLFSTFMSAYTVVEPRL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,891
Number of Sequences: 5004
Number of extensions: 42451
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)