Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09f
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724...    32   0.35 
01_07_0214 - 42055848-42056155,42056263-42056442,42056560-420570...    30   1.4  
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   3.3  
05_01_0120 - 828834-831143                                             28   5.8  
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764...    27   7.6  

>03_02_0300 -
           7246312-7246662,7246757-7246831,7246920-7246993,
           7247247-7247334,7247464-7247615,7247702-7247861,
           7247940-7248095,7248181-7248396,7248808-7249065,
           7249816-7250019,7251334-7251423
          Length = 607

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 190 IDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPA-KKELIYEEKQIPAKIEPLPEDL 366
           +D   A   +LR S + K  EL  LV  A+IG  +P  K +     K+  AK+ PL EDL
Sbjct: 62  VDSANAERSQLRQSLMAKEAELKVLV--ASIGEITPKFKVDEKQSLKEQLAKVTPLLEDL 119

Query: 367 VEDKLRGDLGYNLIMKECEAQLHQLS 444
              K      ++L+  + E    Q+S
Sbjct: 120 RSKKEERIKQFSLVQSQIEKIKAQIS 145


>01_07_0214 -
           42055848-42056155,42056263-42056442,42056560-42057077,
           42059507-42060063
          Length = 520

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 223 RISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381
           R+     A+ +SP + + T+  GPN        YE   IPA ++ L  DL +D L
Sbjct: 340 RLGVRVPAIVISPWINKGTVVHGPNGSPTATSEYEHSSIPATVKKL-FDLPQDFL 393


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
 Frame = +2

Query: 17  VKWLYN-----AGAGV*VVICTFTSIFKGYT*IVQRIHLTTATMIDLEKFSIEAL----- 166
           +KWL N     AGAG  ++    T + K    I Q  +L T   IDL +FS++++     
Sbjct: 614 IKWLRNLIVGAAGAGSGMIDSDQTVLTKIPETIHQLRYLKTLATIDLSEFSVKSVQSLGD 673

Query: 167 LRK*EILVLTKL*RGLAN*EYQPLLK 244
           L++ E+L +T      ++ +YQ  L+
Sbjct: 674 LKQLEVLTITWSFHQCSDKDYQQALR 699


>05_01_0120 - 828834-831143
          Length = 769

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 100 STKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLV 267
           S+++  + S N+   +    SI S  + SSI E   GF  L++ +  K + L P V
Sbjct: 552 SSRSPLHQSSNEEPSKSGLGSIRSPSKTSSIAERRGGFSSLKLPSFQKDLVLPPRV 607


>04_04_0841 -
           28574497-28574883,28575815-28576188,28576262-28576439,
           28576816-28576896,28578134-28578361,28578460-28578579,
           28578646-28579353,28579471-28579588,28579686-28579978,
           28580101-28580169
          Length = 851

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = +1

Query: 184 SSIDETLAGFGKLRISALTKAVELS----PLVKEATIGPNSPAKKELIYEE--KQIPAKI 345
           + ID++L  F +L +SA+ + V+++    PL       P+SPAK+ L +EE     P  I
Sbjct: 306 AGIDKSL--FLELAMSAMDELVKMAQMGDPLWIPGASVPSSPAKESLNFEEYLNTFPPCI 363

Query: 346 EPLPEDLVEDKLR 384
              PE  V +  R
Sbjct: 364 GVKPEGYVSEASR 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,518
Number of Sequences: 37544
Number of extensions: 235294
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)