Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09f
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)           31   0.84 
SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7)                   29   2.6  
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)                     28   4.5  
SB_16545| Best HMM Match : Cullin (HMM E-Value=0)                      28   5.9  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  27   7.8  

>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 88  IHMNSTKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLV 267
           IH+N   N  Y  YN +        I S ++   I +++ GF   R++A+T+  +L P V
Sbjct: 228 IHLNRPWNPKYHDYNSKTENRFESHIRSLVK--LIFDSVPGFVNDRVAAITEGPDLHPYV 285

Query: 268 K 270
           +
Sbjct: 286 R 286


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +1

Query: 220  LRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVE 372
            +R  AL+   ++SP++ +    P  P +KE + E K++    EPL +DL++
Sbjct: 1546 MRAIALSLGQDISPMIVDQ---PPPPPQKEPLKEPKELTEDEEPLAKDLID 1593


>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
          Length = 690

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = +1

Query: 238 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL---VEDKLRGDLGYNLI 408
           TK  ++ P VKE   G   PAK   + E      ++  L E+L    E+K + +     I
Sbjct: 588 TKKEDIQPEVKEQAEGAE-PAKVFTVTETVSDTKEVARLQEELNKFKEEKTKFEEEVKKI 646

Query: 409 MKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRER 540
            +EC   L +LS E  +    +  C R       F+K + + ++
Sbjct: 647 QEECTKHLDELSQEKDKLLKAEEECSRLGKEKTRFEKQASENKQ 690


>SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7)
          Length = 199

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/88 (17%), Positives = 44/88 (50%)
 Frame = +1

Query: 175 MRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPL 354
           ++D ++  +L+ F     S+L +++   P+V       +  AK+ L+Y++ + PA+   +
Sbjct: 99  LQDIAVGNSLS-FSTANQSSLPQSISAKPVVTLRITDLDEEAKERLLYDDCRNPAERRAV 157

Query: 355 PEDLVEDKLRGDLGYNLIMKECEAQLHQ 438
            E L +     +     ++++ + ++ +
Sbjct: 158 AEKLTQPPTAAEQAEQQLVQQVQGEVRR 185


>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
          Length = 817

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 187 SIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYE 321
           S   TL    +  ++ LTK ++ S    EA      P+K++LIY+
Sbjct: 225 SSQPTLNAINQQAVATLTKRLKPSVTSSEAAANAERPSKEQLIYQ 269


>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 471

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 358 EDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMI 480
           EDL   K    + Y+ +++ECEA++ +  + + +    QM+
Sbjct: 96  EDLRARKFLHPVSYSRVIRECEARMVEEHIPYLQAECRQMV 136


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = +1

Query: 91  HMNSTKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVK 270
           H N+ ++SS  S ++  G    +  T +   +S+    +G  + + S L K  E++    
Sbjct: 554 HQNTPQSSSSSSTSNISGVDQQKQATQQESQTSVSPQTSGTDQSQSSPLEK--EVAKQES 611

Query: 271 EATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVED 375
           +  + P S  K+E        PA   P PE +  D
Sbjct: 612 QPNVSPQSGGKQES-------PANTSPSPERVEGD 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,904
Number of Sequences: 59808
Number of extensions: 285369
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)