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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09f
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    30   1.3  
AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     28   3.9  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     28   3.9  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    28   3.9  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    27   9.1  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    27   9.1  

>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 268  KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL-VEDKLRGDLGYNLIMKECEAQLHQLS 444
            K+ ++G   P KKE + +EK   A  EP+ + + V+ K  G      ++K+ E  +HQ  
Sbjct: 1162 KKVSVGAEKPKKKEKVVDEKD-KADGEPVDKKIKVDSKKNGTTSSEKVVKDDE--VHQNG 1218

Query: 445  VEFFRKS 465
             E  +K+
Sbjct: 1219 SETEKKA 1225


>AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical
           protein B0205.9 protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 27/125 (21%), Positives = 52/125 (41%)
 Frame = +1

Query: 100 STKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEAT 279
           ST +  YD ++ RL  I+N   T  +R+  +   L   GK+    LT   +L  +  +  
Sbjct: 42  STYSMCYDKFHHRLAPIMNELNTYSIRE-RVRVMLTMGGKVSKDFLTTIEKLGTVQLDEK 100

Query: 280 IGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFR 459
                 A K+  ++ +   ++          D +R     ++  + C  +  Q+SV+ F 
Sbjct: 101 RRILKYASKDGKFKIEGARSEFMDFLIQQTRDAVRPMTSTSIAKEFCRIKDRQVSVDTFN 160

Query: 460 KSFEQ 474
           K F +
Sbjct: 161 KKFRR 165


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73

Query: 499 MNKCFQKYSEQRERR 543
               F +Y+E  ER+
Sbjct: 74  TAHLFNRYTEDEERK 88


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95

Query: 499 MNKCFQKYSEQRERR 543
               F +Y+E  ER+
Sbjct: 96  TAHLFNRYTEDEERK 110


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73

Query: 499 MNKCFQKYSEQRERR 543
               F +Y+E  ER+
Sbjct: 74  TAHLFNRYTEDEERK 88


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95

Query: 499 MNKCFQKYSEQRERR 543
               F +Y+E  ER+
Sbjct: 96  TAHLFNRYTEDEERK 110


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +1

Query: 313 IYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLS-----VEFFRKSFEQM 477
           I + KQ  +K+E   E L E+ L+ +  YNL     EA L  +      ++ + +  EQ 
Sbjct: 517 IADLKQKHSKLEKHVEGLKEENLKQERNYNLTQSNLEANLSSMREGLTILQQYTEELEQE 576

Query: 478 ICKRAEIMNKCFQKYSEQRE 537
             K  E++    ++ S Q E
Sbjct: 577 RQKYQEMLTARSEETSVQAE 596


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381
           + +++GP+SP++K     E   P  +    ED + D +
Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381
           + +++GP+SP++K     E   P  +    ED + D +
Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,406
Number of Sequences: 27780
Number of extensions: 232700
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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