Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k09f
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 30 1.3
AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical ... 29 3.0
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 3.9
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 3.9
AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 28 3.9
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 27 9.1
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 27 9.1
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL-VEDKLRGDLGYNLIMKECEAQLHQLS 444
K+ ++G P KKE + +EK A EP+ + + V+ K G ++K+ E +HQ
Sbjct: 1162 KKVSVGAEKPKKKEKVVDEKD-KADGEPVDKKIKVDSKKNGTTSSEKVVKDDE--VHQNG 1218
Query: 445 VEFFRKS 465
E +K+
Sbjct: 1219 SETEKKA 1225
>AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical
protein B0205.9 protein.
Length = 532
Score = 28.7 bits (61), Expect = 3.0
Identities = 27/125 (21%), Positives = 52/125 (41%)
Frame = +1
Query: 100 STKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEAT 279
ST + YD ++ RL I+N T +R+ + L GK+ LT +L + +
Sbjct: 42 STYSMCYDKFHHRLAPIMNELNTYSIRE-RVRVMLTMGGKVSKDFLTTIEKLGTVQLDEK 100
Query: 280 IGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFR 459
A K+ ++ + ++ D +R ++ + C + Q+SV+ F
Sbjct: 101 RRILKYASKDGKFKIEGARSEFMDFLIQQTRDAVRPMTSTSIAKEFCRIKDRQVSVDTFN 160
Query: 460 KSFEQ 474
K F +
Sbjct: 161 KKFRR 165
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
EE P + LP E + GDL +E Q +L+ + K+ +MI + +
Sbjct: 15 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73
Query: 499 MNKCFQKYSEQRERR 543
F +Y+E ER+
Sbjct: 74 TAHLFNRYTEDEERK 88
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
EE P + LP E + GDL +E Q +L+ + K+ +MI + +
Sbjct: 37 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95
Query: 499 MNKCFQKYSEQRERR 543
F +Y+E ER+
Sbjct: 96 TAHLFNRYTEDEERK 110
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
EE P + LP E + GDL +E Q +L+ + K+ +MI + +
Sbjct: 15 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73
Query: 499 MNKCFQKYSEQRERR 543
F +Y+E ER+
Sbjct: 74 TAHLFNRYTEDEERK 88
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498
EE P + LP E + GDL +E Q +L+ + K+ +MI + +
Sbjct: 37 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95
Query: 499 MNKCFQKYSEQRERR 543
F +Y+E ER+
Sbjct: 96 TAHLFNRYTEDEERK 110
>AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical
protein C16A11.5 protein.
Length = 643
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +1
Query: 313 IYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLS-----VEFFRKSFEQM 477
I + KQ +K+E E L E+ L+ + YNL EA L + ++ + + EQ
Sbjct: 517 IADLKQKHSKLEKHVEGLKEENLKQERNYNLTQSNLEANLSSMREGLTILQQYTEELEQE 576
Query: 478 ICKRAEIMNKCFQKYSEQRE 537
K E++ ++ S Q E
Sbjct: 577 RQKYQEMLTARSEETSVQAE 596
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381
+ +++GP+SP++K E P + ED + D +
Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381
+ +++GP+SP++K E P + ED + D +
Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,406
Number of Sequences: 27780
Number of extensions: 232700
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -