BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k09f (554 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 30 1.3 AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical ... 29 3.0 Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 3.9 Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 3.9 AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 3.9 AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 3.9 AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 28 3.9 U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 27 9.1 U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 27 9.1 >U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned gene nameprotein 213 protein. Length = 1437 Score = 29.9 bits (64), Expect = 1.3 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL-VEDKLRGDLGYNLIMKECEAQLHQLS 444 K+ ++G P KKE + +EK A EP+ + + V+ K G ++K+ E +HQ Sbjct: 1162 KKVSVGAEKPKKKEKVVDEKD-KADGEPVDKKIKVDSKKNGTTSSEKVVKDDE--VHQNG 1218 Query: 445 VEFFRKS 465 E +K+ Sbjct: 1219 SETEKKA 1225 >AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical protein B0205.9 protein. Length = 532 Score = 28.7 bits (61), Expect = 3.0 Identities = 27/125 (21%), Positives = 52/125 (41%) Frame = +1 Query: 100 STKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEAT 279 ST + YD ++ RL I+N T +R+ + L GK+ LT +L + + Sbjct: 42 STYSMCYDKFHHRLAPIMNELNTYSIRE-RVRVMLTMGGKVSKDFLTTIEKLGTVQLDEK 100 Query: 280 IGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFR 459 A K+ ++ + ++ D +R ++ + C + Q+SV+ F Sbjct: 101 RRILKYASKDGKFKIEGARSEFMDFLIQQTRDAVRPMTSTSIAKEFCRIKDRQVSVDTFN 160 Query: 460 KSFEQ 474 K F + Sbjct: 161 KKFRR 165 >Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical protein C32A3.1b protein. Length = 468 Score = 28.3 bits (60), Expect = 3.9 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +1 Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498 EE P + LP E + GDL +E Q +L+ + K+ +MI + + Sbjct: 15 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73 Query: 499 MNKCFQKYSEQRERR 543 F +Y+E ER+ Sbjct: 74 TAHLFNRYTEDEERK 88 >Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical protein C32A3.1a protein. Length = 490 Score = 28.3 bits (60), Expect = 3.9 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +1 Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498 EE P + LP E + GDL +E Q +L+ + K+ +MI + + Sbjct: 37 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95 Query: 499 MNKCFQKYSEQRERR 543 F +Y+E ER+ Sbjct: 96 TAHLFNRYTEDEERK 110 >AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. Length = 468 Score = 28.3 bits (60), Expect = 3.9 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +1 Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498 EE P + LP E + GDL +E Q +L+ + K+ +MI + + Sbjct: 15 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73 Query: 499 MNKCFQKYSEQRERR 543 F +Y+E ER+ Sbjct: 74 TAHLFNRYTEDEERK 88 >AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. Length = 490 Score = 28.3 bits (60), Expect = 3.9 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +1 Query: 319 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 498 EE P + LP E + GDL +E Q +L+ + K+ +MI + + Sbjct: 37 EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95 Query: 499 MNKCFQKYSEQRERR 543 F +Y+E ER+ Sbjct: 96 TAHLFNRYTEDEERK 110 >AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical protein C16A11.5 protein. Length = 643 Score = 28.3 bits (60), Expect = 3.9 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Frame = +1 Query: 313 IYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLS-----VEFFRKSFEQM 477 I + KQ +K+E E L E+ L+ + YNL EA L + ++ + + EQ Sbjct: 517 IADLKQKHSKLEKHVEGLKEENLKQERNYNLTQSNLEANLSSMREGLTILQQYTEELEQE 576 Query: 478 ICKRAEIMNKCFQKYSEQRE 537 K E++ ++ S Q E Sbjct: 577 RQKYQEMLTARSEETSVQAE 596 >U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transcription factor LIM-4 protein. Length = 355 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/38 (26%), Positives = 20/38 (52%) Frame = +1 Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381 + +++GP+SP++K E P + ED + D + Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346 >U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family protein 4 protein. Length = 355 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/38 (26%), Positives = 20/38 (52%) Frame = +1 Query: 268 KEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 381 + +++GP+SP++K E P + ED + D + Sbjct: 309 QRSSVGPSSPSQKSDSSSEMMYPTSVTTSVEDAIPDSI 346 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,858,406 Number of Sequences: 27780 Number of extensions: 232700 Number of successful extensions: 618 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 618 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1134321766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -