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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k09f
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    31   0.52 
At2g26870.1 68415.m03224 phosphoesterase family protein low simi...    28   3.6  
At5g47240.1 68418.m05825 MutT/nudix family protein similar to SP...    28   4.8  
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he...    28   4.8  
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ...    27   6.4  
At1g16060.2 68414.m01927 ovule development protein, putative sim...    27   6.4  
At1g16060.1 68414.m01926 ovule development protein, putative sim...    27   6.4  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   8.4  

>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
 Frame = +1

Query: 106  KNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIG 285
            K S  D    +  EIL    + +     +DET A   K R +A   A E  P++KE  I 
Sbjct: 917  KRSRGDLEEAKTQEILKLKSSFEEMRKKVDETNALLLKEREAAKKAAEEAPPVIKETQIL 976

Query: 286  PNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEA-QLHQLSVEFFRK 462
                 K EL+ EE      +E +   L  +K R D       +  E+ +  +  +E   K
Sbjct: 977  VEDTKKIELMTEE------LESVKVTLENEKQRADDAVRKFEEAQESLEDKKKKLEETEK 1030

Query: 463  SFEQMICKRAEIMNKCFQKYSEQRERR 543
              +Q+      +  KC    SE +  R
Sbjct: 1031 KGQQLQESLTRMEEKCSNLESENKVLR 1057


>At2g26870.1 68415.m03224 phosphoesterase family protein low
           similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
           precursor (EC 3.1.4.3) (Phosphatidylcholine
           cholinephosphohydrolase) {Burkholderia pseudomallei};
           contains Pfam profile PF04185: Phosphoesterase family
          Length = 514

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 193 DETLAGFGKLRISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPAKIEPL 354
           D  L  F +L I   T AV  SP +++ T+  GPN        YE   IPA ++ L
Sbjct: 332 DPFLFQFNRLGIRVPTIAV--SPWIEKGTVVHGPNGSPFPSSEYEHSSIPATVKKL 385


>At5g47240.1 68418.m05825 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 369

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 295 PAKKELIYEEKQIPA-KIEPLPEDLVEDKLRGDLGYNLIMKECEAQL 432
           P   ++I +  +I A K  PL E + +  +RGD  +  +++ CEA+L
Sbjct: 278 PLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARL 324


>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
           organizer protein P17F11 GI:17976973 from [Xenopus
           laevis]; contains a NUDIX hydrolase domain IPR000086
          Length = 311

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 130 NDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGP 288
           N + GE+LN+ +T +M DS I E +   G +  S+L+  + +    +E  + P
Sbjct: 185 NVQTGEVLNKKVTQEMFDSIICEVVEETG-IPASSLSSPLFIGISRRELNVRP 236


>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
           Helicase [Arabidopsis thaliana] GI:10944747
          Length = 606

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 QLSVEFFRKSFEQMICKRAEIMNKC 510
           Q+ +E+F +SF++MICK +  +N C
Sbjct: 578 QMLLEYFGESFDRMICKSS--LNPC 600


>At1g16060.2 68414.m01927 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 275

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 238 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 348
           TK ++ SPLV E  IGP++P   E+    +  P  I+
Sbjct: 203 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 237


>At1g16060.1 68414.m01926 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 345

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 238 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 348
           TK ++ SPLV E  IGP++P   E+    +  P  I+
Sbjct: 273 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 307


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 405 EIITEIPS--ELIFNKVLWQRFNFGGDLFFF 319
           E++  IPS  ++IF+K  W   +F GD++F+
Sbjct: 153 ELVDIIPSKSDIIFDKCTWCGKDFKGDVWFY 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,157
Number of Sequences: 28952
Number of extensions: 206665
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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