Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k09f
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 31 0.52
At2g26870.1 68415.m03224 phosphoesterase family protein low simi... 28 3.6
At5g47240.1 68418.m05825 MutT/nudix family protein similar to SP... 28 4.8
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he... 28 4.8
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 27 6.4
At1g16060.2 68414.m01927 ovule development protein, putative sim... 27 6.4
At1g16060.1 68414.m01926 ovule development protein, putative sim... 27 6.4
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 27 8.4
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 31.1 bits (67), Expect = 0.52
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
Frame = +1
Query: 106 KNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIG 285
K S D + EIL + + +DET A K R +A A E P++KE I
Sbjct: 917 KRSRGDLEEAKTQEILKLKSSFEEMRKKVDETNALLLKEREAAKKAAEEAPPVIKETQIL 976
Query: 286 PNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEA-QLHQLSVEFFRK 462
K EL+ EE +E + L +K R D + E+ + + +E K
Sbjct: 977 VEDTKKIELMTEE------LESVKVTLENEKQRADDAVRKFEEAQESLEDKKKKLEETEK 1030
Query: 463 SFEQMICKRAEIMNKCFQKYSEQRERR 543
+Q+ + KC SE + R
Sbjct: 1031 KGQQLQESLTRMEEKCSNLESENKVLR 1057
>At2g26870.1 68415.m03224 phosphoesterase family protein low
similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
precursor (EC 3.1.4.3) (Phosphatidylcholine
cholinephosphohydrolase) {Burkholderia pseudomallei};
contains Pfam profile PF04185: Phosphoesterase family
Length = 514
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 193 DETLAGFGKLRISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPAKIEPL 354
D L F +L I T AV SP +++ T+ GPN YE IPA ++ L
Sbjct: 332 DPFLFQFNRLGIRVPTIAV--SPWIEKGTVVHGPNGSPFPSSEYEHSSIPATVKKL 385
>At5g47240.1 68418.m05825 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 369
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 295 PAKKELIYEEKQIPA-KIEPLPEDLVEDKLRGDLGYNLIMKECEAQL 432
P ++I + +I A K PL E + + +RGD + +++ CEA+L
Sbjct: 278 PLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARL 324
>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
organizer protein P17F11 GI:17976973 from [Xenopus
laevis]; contains a NUDIX hydrolase domain IPR000086
Length = 311
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 130 NDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGP 288
N + GE+LN+ +T +M DS I E + G + S+L+ + + +E + P
Sbjct: 185 NVQTGEVLNKKVTQEMFDSIICEVVEETG-IPASSLSSPLFIGISRRELNVRP 236
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 436 QLSVEFFRKSFEQMICKRAEIMNKC 510
Q+ +E+F +SF++MICK + +N C
Sbjct: 578 QMLLEYFGESFDRMICKSS--LNPC 600
>At1g16060.2 68414.m01927 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 275
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 238 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 348
TK ++ SPLV E IGP++P E+ + P I+
Sbjct: 203 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 237
>At1g16060.1 68414.m01926 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 345
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 238 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 348
TK ++ SPLV E IGP++P E+ + P I+
Sbjct: 273 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 307
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -3
Query: 405 EIITEIPS--ELIFNKVLWQRFNFGGDLFFF 319
E++ IPS ++IF+K W +F GD++F+
Sbjct: 153 ELVDIIPSKSDIIFDKCTWCGKDFKGDVWFY 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,157
Number of Sequences: 28952
Number of extensions: 206665
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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