Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k08r
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    26   0.36 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    26   0.36 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.5  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 225 PGCR-VSTCSHSRAYELYASTVRHN 154
           PGC  V +CS+ +  E +A  +RHN
Sbjct: 376 PGCHMVDSCSNIQTGEQFARLLRHN 400


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 225 PGCR-VSTCSHSRAYELYASTVRHN 154
           PGC  V +CS+ +  E +A  +RHN
Sbjct: 383 PGCHMVDSCSNIQTGEQFARLLRHN 407


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 592 VHNNNVAVGDGQQGG 636
           V+NN +  GDG  GG
Sbjct: 505 VYNNKIPTGDGALGG 519


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 147 RNDCDEQWRRTIRRLDCESRY*LCNPVGGFCHRWGKSHHE 266
           R D    ++  ++  + E R    N V  FC    K+H E
Sbjct: 282 RTDLVPAFQNLLKDTEAEVRAAAANKVKDFCQNLDKAHQE 321


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +1

Query: 376 RIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSID 555
           R ++G+   S +   SS  +++  + +  +    P+ ++    PD++     SD     D
Sbjct: 803 RERSGSESSSISERCSSRVESLTPERKM-EPPGVPLNSTPRSTPDKREKSPTSDKAQEAD 861

Query: 556 GSVV 567
           G VV
Sbjct: 862 GEVV 865


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 673 QQRKLRCEHHDPPRLAGRLRLQRYCCGL 590
           Q R+++ +  D P  AG+      CC L
Sbjct: 166 QNRRVKYKKEDLPAAAGKASNGNKCCCL 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.129    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,855
Number of Sequences: 336
Number of extensions: 5044
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)