Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k05r
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q60UJ8 Cluster: Putative uncharacterized protein CBG199...    36   0.75 
UniRef50_Q0J8M9 Cluster: Os08g0103400 protein; n=3; Oryza sativa...    33   5.3  
UniRef50_Q8LGN0 Cluster: Glutamate receptor 2.7 precursor; n=32;...    33   9.2  

>UniRef50_Q60UJ8 Cluster: Putative uncharacterized protein CBG19956;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG19956 - Caenorhabditis
           briggsae
          Length = 1304

 Score = 36.3 bits (80), Expect = 0.75
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = -2

Query: 552 HFFISFQLVCYLSIHKTHQNFVELFVKLSKCCKEKKQINNKEKLRFV*IY-----FSNNS 388
           H   + + VC+ S+ + H+  +E F K+S      KQ+   E LRFV  +     F N  
Sbjct: 62  HEVYTLRNVCFKSLLEDHKEILEKFAKISSTTY--KQLC--ENLRFVAYFKKLPIFKNTD 117

Query: 387 LSICLYFVCTCTIHIKHHWLLRLNMSSPFD 298
            S     VC C   ++  W+     ++ FD
Sbjct: 118 SSNFFRLVCNCIFFVEKRWINGFKQTNLFD 147


>UniRef50_Q0J8M9 Cluster: Os08g0103400 protein; n=3; Oryza
           sativa|Rep: Os08g0103400 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 318

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -2

Query: 402 FSNNSLSICLYFVCTCTIHIK------HHWLLRLNMSSPFDVVIIDFHCICMYLI 256
           F +++  +C+Y    C +HIK      HH +++    SP  V I+ +  IC + +
Sbjct: 88  FVSSAAILCIYIFSMCALHIKLLMNRDHHSVIKAIKESPASVAIMAYCFICFWFV 142


>UniRef50_Q8LGN0 Cluster: Glutamate receptor 2.7 precursor; n=32;
           Magnoliophyta|Rep: Glutamate receptor 2.7 precursor -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 952

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 398 EKYIYTKRNFSLLLICFFSLQHFESFTNNSTKFWCVLCIDK*QTN*KDMKKW 553
           EK +     F +L+ CF  L   +S+T N T F+ V  +    TN KD+ K+
Sbjct: 636 EKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKF 687


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,796,904
Number of Sequences: 1657284
Number of extensions: 12885822
Number of successful extensions: 26658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26653
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)