BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12k05r (715 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 27 2.0 SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 4.7 SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 6.1 SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.1 SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos... 25 8.1 >SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizosaccharomyces pombe|chr 1|||Manual Length = 299 Score = 27.5 bits (58), Expect = 2.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 358 LHDTH*TSLVVTTEYEQSLRCCYNRFSLYMYVFD 257 +H+T L V + YEQS CC N S ++ D Sbjct: 259 IHETGNNELPVASAYEQSKACC-NELSTFLSQID 291 >SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein intermediate chain Dic1|Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 26.2 bits (55), Expect = 4.7 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = +3 Query: 450 FLCNILKVSRITPQSFGV 503 FLC ILK + +TPQ++ + Sbjct: 48 FLCKILKPTNLTPQTYSL 65 >SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 25.8 bits (54), Expect = 6.1 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = +2 Query: 359 VQTKYKQIDSELLEKYIYTKRNFSLLLICFFS----LQHFESFTNNS 487 V K+ +++ ELLEK+ T++N L L F+ +QH ++ + Sbjct: 485 VPEKFDKLEIELLEKFQQTQQNTHLALCDSFNTPLVMQHIDNLVTQA 531 >SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit Bgs4|Schizosaccharomyces pombe|chr 3|||Manual Length = 1955 Score = 25.8 bits (54), Expect = 6.1 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = -2 Query: 549 FFISFQLVCYLSIHKTHQNFVELFVKLSKCCKEKKQINNKEKLRFV*IYFSNNSLSICLY 370 F +S Y S+ F +L VK S+ K N F + F N +LS+ ++ Sbjct: 635 FLMSIATYVYFSLVPLQSTFGKLSVKDSR----KYLANKYFTSNFAPLKFDNQALSVIIW 690 Query: 369 FVCTCTIHI-KHHWLLRLNMSSPFDVV 292 VC T + ++ L L++ P V+ Sbjct: 691 -VCVFTCKFAESYFFLTLSIRDPIIVL 716 >SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 206 Score = 25.4 bits (53), Expect = 8.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 356 QVQTKYKQIDSELLEKYIYTKRN 424 +V+ K Q+D E+L+KY +T N Sbjct: 154 KVKPKNAQLDKEILDKYYFTGCN 176 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,927,387 Number of Sequences: 5004 Number of extensions: 62235 Number of successful extensions: 145 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 333194204 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -