Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k05r
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 33   0.30 
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              28   6.5  
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)                    28   8.6  

>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 650  AIKIRKENNRILFSVGSF-LILRNKNVYAVESKP 552
            AIK+R  NNR+L+    F L LR KN+Y    KP
Sbjct: 1293 AIKLRTGNNRVLYLQTYFHLFLRRKNIYLKFGKP 1326


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 408  IYFSNNSLSICLYFVCTCTIH-IKHHWLLRL--NMSSPFDVVIIDFHCICMYLI 256
            +Y    S+ ICLY V    I+ +    LL +    +S   V I   HC C+Y++
Sbjct: 1624 VYGYTLSVRICLYIVSAYNIYTLSVRTLLYIVSAFTSTLSVRITSIHCQCVYIV 1677


>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
          Length = 860

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 387 LSICLYFVCTCTIHIKHH--WLLRLNMSSPFDVVIIDFHCICMY 262
           L+  L  +  C + I HH  W L  N+       I DF+ +C Y
Sbjct: 207 LTAWLGSILFCVLQIAHHLQWRLTKNLYRDISTAIEDFNRLCEY 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,751
Number of Sequences: 59808
Number of extensions: 407118
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)