Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k05r
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    28   5.8  

>Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK218.6 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 402 FSNNSLSICLYFVCTCTIHIKHHWLLRLNMSSPFDVVIID-FHCICMYLITTFP*SVPD 229
           F NNS   CL     CT+H      L+  +S PF ++ +D F C+ +  +     S P+
Sbjct: 211 FINNS---CLRPDAFCTVHNDFLNTLKRELSQPFRILQLDSFECVILKTLMLLTPSFPE 266


>U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical
           protein T13C2.2 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 562 SQSPLLHIFSVSLLLIYTQD-TPKLCGVIRETFKMLQRKKTN**QRKI 422
           +++P+  +   S+ L+  +  TPK+   IRET++ +Q+KK     RK+
Sbjct: 68  NKAPIQKMAETSVFLLEKRTITPKVMHQIRETYEKIQKKKEGELSRKM 115


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 435 NKEKLRFV*IYFSNNSLSICLYFVCTCT 352
           +K++ RF+ I F + S++I L+ +CT T
Sbjct: 18  SKDRKRFIVITFFDTSITILLWLLCTVT 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,731
Number of Sequences: 27780
Number of extensions: 336875
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)