Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k05r
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    33   0.25 
At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    29   4.0  
At4g13400.1 68417.m02093 expressed protein                             29   4.0  

>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 398 EKYIYTKRNFSLLLICFFSLQHFESFTNNSTKFWCVLCIDK*QTN*KDMKKW 553
           EK +     F +L+ CF  L   +S+T N T F+ V  +    TN KD+ K+
Sbjct: 610 EKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKF 661


>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 405 YFSNNSLSICLYFVCTCTIHIKHHWLLR-LNMSSPFDVVIIDFHC 274
           Y S+++   C       + H++HHW  R +NM    D+    F+C
Sbjct: 124 YCSSSAAKDCKCVAQAGSDHVRHHWSERWVNMDDNADMTAFCFYC 168


>At4g13400.1 68417.m02093 expressed protein
          Length = 319

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 305 GLLIFSRNNQ*CLMCIVQVQTKYKQIDSELLEKYIYTKRNFSLLLICFFSLQHFESFTNN 484
           G L+F         C   V    KQ + + LEK +   R     L+ +F  Q   +  N+
Sbjct: 152 GKLMFEVGLMVAYHCDQYVSKGIKQHEKQNLEKILLGSRCHKGRLLYYFPAQESSTHDND 211

Query: 485 STKFWC 502
           S   WC
Sbjct: 212 SISSWC 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,763
Number of Sequences: 28952
Number of extensions: 284852
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)