Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k05f
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...   173   2e-44
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      32   0.073
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    30   0.29 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   1.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   1.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   3.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   6.3  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score =  173 bits (420), Expect = 2e-44
 Identities = 87/160 (54%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
 Frame = +1

Query: 118 MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 297
           M  IKL SSDNE FVVD  IA+ S+ IK                PLPNV+S +L+KV++W
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57

Query: 298 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 471
             +HK+D      E+ + + K++ DI  WD  F+ VDQ  LFE++LA+NYLDIK LLD  
Sbjct: 58  CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117

Query: 472 CKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 591
           CKTVANMI+GK+PE+IRKTFNI NDFT  EE+Q+RKENEW
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEW 157


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 127 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 306
           ++L S D  VF+++ EIA  S TI+                  P++ + +L+KV ++  Y
Sbjct: 6   VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65

Query: 307 ---HKDDPPLPEDD 339
              +K+   +P+ D
Sbjct: 66  NYRYKNQLDIPKFD 79


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 322 PLPEDDENKEKRTDDISSWDADFLKVDQGT 411
           P+P  D NK   T D+SSW+ D+  +  G+
Sbjct: 9   PIPRSDSNK---TSDVSSWEEDYELISLGS 35


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 460 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 573
           L VT KTV   + G TP+  R+  N+  D +   +  V
Sbjct: 96  LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 322 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 486
           P  +DD N +  +DD S+ D    ++D   L E +L   N    + L D+T  T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +2

Query: 53  HFRLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKSPNA 187
           +F+LK   ++L+ + ++L K+       N+Q+T + + + KSPNA
Sbjct: 31  NFKLKSPSYYLLNSFKLLVKSEG-----NNQSTTADVTLTKSPNA 70


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  RLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKS 178
           +LKI      V + ILEK   ++  C+H+   S  L L S
Sbjct: 208 KLKIENNSRSVKLSILEKALKEVKGCDHEILVSYYLQLGS 247


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 86  LSEIYLSSNENALMFW 39
           L+ IY++ N+NAL FW
Sbjct: 537 LAPIYVTFNDNALTFW 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,503
Number of Sequences: 5004
Number of extensions: 44801
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)