Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12k05f
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13) 164 6e-41
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1) 28 5.0
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 28 5.0
SB_44640| Best HMM Match : LIM (HMM E-Value=0.44) 28 5.0
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.0
SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.0
SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18) 28 6.6
SB_7125| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09) 27 8.7
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13)
Length = 93
Score = 164 bits (398), Expect = 6e-41
Identities = 75/83 (90%), Positives = 78/83 (93%)
Frame = +1
Query: 250 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 429
PLPNVN+AILKKVIQWAT HKDDPP P+DDENKEKRTDDI WD +FLKVDQGTLFELIL
Sbjct: 10 PLPNVNAAILKKVIQWATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLKVDQGTLFELIL 69
Query: 430 AANYLDIKGLLDVTCKTVANMIK 498
AANYLDIKGLLDVTCKTVANMIK
Sbjct: 70 AANYLDIKGLLDVTCKTVANMIK 92
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -1
Query: 140 DCNLIFGILFFQVFECSQLSEIYLSSNENALMFWRFFLKPKQ 15
DC + +F + EC L ++YL +++ ++ +F K K+
Sbjct: 1497 DCQIECPEIFHVIMECGVLGQLYLFTSKKVFLWAKFAAKGKK 1538
>SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1)
Length = 471
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 411
L +++ I +K ++ Y + + PLPE + E+R + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 411
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL++ +GT
Sbjct: 184 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 236
>SB_44640| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 788
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 411
L +++ I +K ++ Y + + PLPE + E+R + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 411
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL++ +GT
Sbjct: 905 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 957
>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 25.0 bits (52), Expect(2) = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 337 DENKEKRTDDISSWDADFLKVDQGTLF 417
D N EKR + +S+D DF K+ ++F
Sbjct: 201 DFNTEKRKNAKNSFDKDFFKLMNNSVF 227
Score = 21.4 bits (43), Expect(2) = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 475 KTVANMIKGKTPEEIRKTFNIK 540
K + N + GKT E +RK +++
Sbjct: 220 KLMNNSVFGKTMENLRKRVDVR 241
>SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 25.0 bits (52), Expect(2) = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 337 DENKEKRTDDISSWDADFLKVDQGTLF 417
D N EKR + +S++ DFLK+ ++F
Sbjct: 42 DFNTEKRKNAKNSFEKDFLKLMNNSVF 68
Score = 21.4 bits (43), Expect(2) = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 475 KTVANMIKGKTPEEIRKTFNIK 540
K + N + GKT E +RK +++
Sbjct: 61 KLMNNSVFGKTMENLRKRVDVR 82
>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
Length = 656
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 250 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKE 351
P PN++S +K+ +H+ PP ++DE ++
Sbjct: 473 PGPNIHSLSVKRKCSKLEHHEGTPPADDEDEEQK 506
>SB_7125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 454 GLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 579
G L +TC T +N +G+TPE+I N + E Q+RK
Sbjct: 26 GKLQITCDTNSN--EGRTPEKIPSFSQDSNLSRSGEMRQMRK 65
>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
Length = 1296
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 411
L +++ I +K ++ Y + + PLPE +E + + + S+ ADFL+ ++GT
Sbjct: 551 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLR-NRGT 603
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 304 YHKDDPPLPEDDENKEKRTDDIS 372
++K+D P +DD+ E+ TDD S
Sbjct: 703 HNKEDKPQEKDDDKSEEETDDES 725
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,177
Number of Sequences: 59808
Number of extensions: 302337
Number of successful extensions: 827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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