Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k04r
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    30   1.9  
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455           29   3.4  
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454...    29   4.5  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.5  
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    28   5.9  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    28   5.9  

>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 467 LKSSRDLGQGPEGDFHSRDNHWSGN 541
           L+SS  LG+ P+G F + D+ W+ N
Sbjct: 255 LRSSSGLGRNPDGTFVAEDDWWAAN 279


>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
          Length = 300

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +2

Query: 425 ILQVRNQNR--VSYRALKSSRDLGQG---PEGDFHSRDNHWSGNLALSSQDGGDDLVERL 589
           I+ +RN N+   S ++  S   LG G   P    H       GN      +  +D+VE+L
Sbjct: 126 IISLRNTNKGLTSLQSSSSPTKLGDGLPLPPSRIHRSKTTVFGN------NDSEDIVEKL 179

Query: 590 AKVRNHSGFSFRVLQSIRQVGNGHC 664
              +  SG   R L S +Q    HC
Sbjct: 180 RPSQRSSGDDHRGLGSAKQAEAPHC 204


>12_02_0869 -
           23844378-23844689,23844924-23845233,23845322-23845447,
           23845522-23845727,23845832-23845964,23846045-23846208,
           23846856-23846948,23847074-23847196,23847318-23847384,
           23847473-23847564,23847667-23847779,23847796-23847845,
           23848098-23848189
          Length = 626

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = +2

Query: 542 LALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQ-----VGNGH 661
           +AL+     +DL+ RLA+ ++H+ F   + +S+++     VG GH
Sbjct: 1   MALTQSMDVNDLISRLAEFQSHTNFDSNLKRSLKEEYDQAVGGGH 45


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 667  TAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 527
            TA+T+   S +   P TEPA++P    AL    TA L   + V +PV
Sbjct: 1365 TAVTVGTPSPSAPTPATEPALVPASASAL---ATAPLMQPNVVISPV 1408


>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 611 RYDSLPWPGAQRG 573
           R+ SLPWPG++RG
Sbjct: 38  RFSSLPWPGSKRG 50


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -1

Query: 661 MTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEI 482
           M  PDL N L+   +    +P L +ALN+V   +   +  +   +   A  + L T    
Sbjct: 155 MLDPDLFNVLRFTISAIPFVPLLLKALNDVQVFIRGVELGIWVAIGYLAQAIGLVTADAG 214

Query: 481 SAALESPVTNPVLVPYLENALNVIMDA 401
             A  S +T  ++VP+L+  L   + A
Sbjct: 215 RTAFISSLT-VIIVPFLDGILGAEIPA 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,984
Number of Sequences: 37544
Number of extensions: 280721
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)