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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k04f
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         38   0.006
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    31   0.91 
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)                    30   1.6  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
 Frame = +1

Query: 145 LPYLETALNQMMAALHAGEKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQ 324
           +P +  A+ +++ A+   E + AVP  +PA+      +P++  A+  P+  PA +P +  
Sbjct: 41  VPEIVPAVPEVVPAVP--EIVPAVPEVVPAVPEVVPVVPEVEPAV--PEVVPA-VPEIVP 95

Query: 325 ALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPV-TNPVLVPYLENALNVI 501
           A+ EVV AV   +   A P ++PA+   +  + E+  A+   V   P +VP +   +  +
Sbjct: 96  AVPEVVPAV--PEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAV 153

Query: 502 MDAMFAGHEVTSICVSIPAGVPLELPV 582
            + + A  EV      + A VP E PV
Sbjct: 154 PEIVPAVPEVVPAVPEVVA-VP-EPPV 178


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 23/107 (21%), Positives = 43/107 (40%)
 Frame = -1

Query: 372 NLALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGEVQSGNGNGYSFNLFSC 193
           NL       G+  +  L  +R+ +      L       +G   +   GN N Y+F+ FSC
Sbjct: 208 NLEKRVSSSGETKLSDLGSIRSDANLHSMDLAIQSNTVDGLSAQASGGNQNSYAFSCFSC 267

Query: 192 VKSSHHLVESRLKVGQDRSRSVRALDGIGELMHGPGSLVAEGHRQDS 52
            +   + + S L V  + + +      +  L   P + + +GH+  S
Sbjct: 268 -EIPQNSLRSELPV--NTTLTTHHPSSLHRLESPPHTYMVKGHQASS 311


>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
          Length = 678

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/99 (24%), Positives = 35/99 (35%)
 Frame = +1

Query: 283 DPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNP 462
           +P+T     P    A+  +    +   +Q     I PA           SA + S +  P
Sbjct: 454 EPETSTDGAPSFSTAVETIAAVTMGMPTQATMTAITPAAAPVAQPWPNASAVMPSSMYAP 513

Query: 463 VLVPYLENALNVIMDAMFAGHEVTSICVSIPAGVPLELP 579
           V  P     + V M ++  GH      V IPA  P   P
Sbjct: 514 V--PMQLPMVTVAMSSLPLGHTTAHYQVPIPAVAPAVTP 550


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 70  FGYQTTWTVHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAV-PVTIPALDLT 246
           FG   T  +H  S+A  + Y   + L  ++      ++   A  ++  + P+TIP L+LT
Sbjct: 174 FGGIKTVELHNFSDASTNGYGQCSYLRLIDNEDRIHVSLAMAKSRVTPLKPITIPRLELT 233

Query: 247 AMTIP-DLSNALQDPKTEPAM 306
           A  +  ++S  LQ     P M
Sbjct: 234 AALVSGNVSAFLQKELGYPGM 254


>SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 289 KTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISA 435
           +T+PA    +G ALN  ++++ T  ++   P   P++E+ L   T  +A
Sbjct: 45  ETDPASFLLVGNALNSRISSLCTQLNETGIPSEPPSVELDLTLDTSATA 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,028
Number of Sequences: 59808
Number of extensions: 432538
Number of successful extensions: 1256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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