Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k04f
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   0.95 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
 Frame = +1

Query: 235 LDLTAMTIPDLSNALQDPKTEP--AMIP---YLGQALNEVVTAVLTGQSQVATPVII-PA 396
           L + A+T+PDLS  +Q  + +P    IP    +   L ++   + T +  ++  V     
Sbjct: 60  LPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAARLIDIFMGMRTYEDFLSVAVYCRDR 119

Query: 397 MEVSLWTLTEISAALESPVTNPVLVPYLENAL-NVIMDA-MFAGHEVTSICVSIPAGVPL 570
           +  +L+      A L  P T  + VP L     +  MD+ +F+     +  V   A VP+
Sbjct: 120 LNPNLFIYALSVAILHRPDTKDLPVPPLTEVFPDKYMDSGIFSRAREEANVVPEGARVPI 179

Query: 571 ELP 579
           E+P
Sbjct: 180 EIP 182


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 389 IITGVATWLCPVRTAVTTSLSAWPR 315
           I+ G+ +  C V   +T ++  WPR
Sbjct: 385 ILIGLDSQFCTVEGFITAAVDEWPR 409


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 389 IITGVATWLCPVRTAVTTSLSAWPR 315
           I+ G+ +  C V   +T ++  WPR
Sbjct: 438 ILIGLDSQFCTVEGFITAAVDEWPR 462


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 366 PGCHSSDYPCYGSLPLDPD 422
           P  H +   C  S+PL+PD
Sbjct: 104 PEVHQAINTCQPSIPLEPD 122


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 466 LVPYLENALNVIMDAMFAGHEVTS 537
           LVPYLEN  N +   + AG +  S
Sbjct: 471 LVPYLENKGNGVYAWIGAGRDSDS 494


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 28  MKFITVFAAILSVAFGYQTTW 90
           M F+ VFAA+L  A    T W
Sbjct: 310 MCFVFVFAALLEYAAVNYTYW 330


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 258 NGHCGEVQSGNGNGYSFN 205
           N + G   +GNGNG S N
Sbjct: 249 NNNNGANDNGNGNGASNN 266


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 321 PG-AQRGRHRRPDWTKPGCHSSDYPCYGSLPLDP 419
           PG AQ GR   P +T     ++  P  GSLP  P
Sbjct: 215 PGHAQMGR---PSYTTATMATTSTPGSGSLPASP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,809
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)