Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12k02f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   184   1e-47
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   182   4e-47
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   118   6e-28
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   2.0  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   4.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   6.1  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   8.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.1  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    25   8.1  

>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  184 bits (447), Expect = 1e-47
 Identities = 88/103 (85%), Positives = 96/103 (93%)
 Frame = +2

Query: 164 RAGLQFPVGRIHRLLRNGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 343
           +AGL FPVGR+HRLLR GNYA+RVGAGAPVYLAAV+EYLAAE+LELAGNAARDNKKTRII
Sbjct: 22  KAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRII 81

Query: 344 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 472
           PRHLQLAIRNDEELNKLL  VTIAQGGV+PNI A LLPK++ K
Sbjct: 82  PRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGK 124


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  182 bits (442), Expect = 4e-47
 Identities = 87/99 (87%), Positives = 93/99 (93%)
 Frame = +2

Query: 164 RAGLQFPVGRIHRLLRNGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 343
           +AGL FPVGR+HRLLR GNYA+RVGAGAPVYLAAV+EYLAAE+LELAGNAARDNKKTRII
Sbjct: 22  KAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRII 81

Query: 344 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 460
           PRHLQLAIRNDEELNKLL  VTIAQGGV+PNI A LLPK
Sbjct: 82  PRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPK 120


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  118 bits (284), Expect = 6e-28
 Identities = 66/104 (63%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
 Frame = +2

Query: 164 RAGLQFPVGRIHRLLRNGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 340
           RAGLQFPVGR+ R L+       RVGA + VY AAV+EYL AEVLELAGNAA+D K  RI
Sbjct: 61  RAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 120

Query: 341 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 472
            PRHLQLAIR DEEL+ L+   TIA GGVLP+I   LL +  EK
Sbjct: 121 TPRHLQLAIRGDEELDTLIR-ATIAGGGVLPHINKQLLIRTKEK 163


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 418 LSDCHTGKEFVQFLVVPYG 362
           LS CH G+  V+ LVV YG
Sbjct: 923 LSACHRGRSMVEKLVVEYG 941


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 379 GTEQTPFRCDNRSR-RSFTKHSSGTTPEEDREESLKNASNSLARTTTTTQHVVD 537
           G E    R D  S  +S  K       +E++++ LKN   S  +    T+H+ D
Sbjct: 53  GIESVGHRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSD 106


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 436 VW*NSALSDCHTGKEFVQ 383
           VW N    DCH  KEF Q
Sbjct: 199 VWRNDKSCDCHVDKEFQQ 216


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 113 RTCLKFKKVNDITHESTRTHACLANVRTERK 21
           +T   FK VND+     R   CLAN   E++
Sbjct: 700 KTLPYFKPVNDLPMHMQRLFFCLANPTAEQR 730


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 227 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 406
           ++V AG PVY+ A  + +   VL       R N    +       AI+NDE+  ++L  +
Sbjct: 675 DKVYAGKPVYVTAFRQLVNDPVLSANMQLVRCNALIGMANN----AIKNDEQELQMLKDL 730

Query: 407 TIAQGGV 427
              + GV
Sbjct: 731 GNLESGV 737


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 228 NALVPVHRFTWPPSWNTWPLKF 293
           +AL+P+  F WP S +  PL F
Sbjct: 491 SALLPLSAFGWPKSKDIQPLPF 512


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 265 GGQVNRCTGTNAFSVISVAQQSVYTTDRKLK 173
           G  V R TG N +   +   + +Y TD +LK
Sbjct: 78  GLAVGRPTGNNIYPRFATKTRHIYVTDEQLK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,342
Number of Sequences: 5004
Number of extensions: 34922
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)