Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24r
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 33 0.17
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08) 33 0.30
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 31 0.70
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 31 0.70
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.2
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05) 30 2.1
SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 30 2.1
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013) 30 2.1
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 2.8
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 2.8
SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 29 2.8
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 3.7
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24) 29 4.9
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046) 28 6.5
SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05) 28 6.5
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39) 28 8.6
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 8.6
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 28 8.6
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECPK 630
R RP MG E+CY CGR GH++++C +
Sbjct: 108 RGRPRMGSNEKCYECGRVGHFARDCTR 134
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDR 612
D +CY CG GGH S ECPK + +R
Sbjct: 103 DKSRCYECGEGGHLSYECPKNMLGER 128
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALGPDRN 609
CY CG GH+++ECPK L P N
Sbjct: 627 CYDCGEEGHFARECPKRLPPTSN 649
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 36.3 bits (80), Expect = 0.025
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECP 633
G G + C++CG GH+S+ECP
Sbjct: 398 GRGQSDTCHKCGETGHYSRECP 419
Score = 31.1 bits (67), Expect = 0.93
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALG 621
C++CG GH+++ECP G
Sbjct: 382 CHKCGEVGHFARECPTGRG 400
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.3 bits (80), Expect = 0.025
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECPK 630
R RP E+CY CGR GH++++C +
Sbjct: 78 RGRPRQASNEKCYECGRVGHFARDCTR 104
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 35.9 bits (79), Expect = 0.033
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALGPDR 612
CY+CG+ GH+++ECP A G R
Sbjct: 202 CYKCGKYGHFARECPDAGGSGR 223
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 33.5 bits (73), Expect = 0.17
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKEC 636
G G C++CG+ GHW+K C
Sbjct: 440 GGGQAGTCFKCGQEGHWAKNC 460
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 33.1 bits (72), Expect = 0.23
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKEC 636
E CYRCG+ GH++++C
Sbjct: 121 ESCYRCGKSGHFARDC 136
Score = 31.1 bits (67), Expect = 0.93
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPK 630
D +CY+CG GH ++CP+
Sbjct: 138 DDTKCYKCGNTGHIRRDCPE 157
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALGPDR 612
CY+CG+ H + CP A G D+
Sbjct: 4 CYQCGKTDHLASNCPDADGDDK 25
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDR 594
D CY CG+ GH S++C P G R+R
Sbjct: 24 DKPVCYSCGKKGHISRDCK---NPSSGGSRNR 52
Score = 29.1 bits (62), Expect = 3.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
CYRC GH++++CP
Sbjct: 78 CYRCQETGHFARDCP 92
>SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08)
Length = 59
Score = 32.7 bits (71), Expect = 0.30
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 695 MGDPEQCYRCGRGGHWSKECPKA 627
M + CY+CG+ GH++++C +A
Sbjct: 4 MSSSKDCYKCGKTGHFARDCTEA 26
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSK--ECPKALG 621
RQ G + CYRCG GH+SK EC KA G
Sbjct: 1517 RQEKEKGKGKHCYRCGMEGHFSKDPEC-KARG 1547
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 31.9 bits (69), Expect = 0.53
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKEC 636
+ C+RCG GHW+++C
Sbjct: 678 DTCFRCGEEGHWAEDC 693
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKA 627
G G C++C GH+++ECP A
Sbjct: 459 GGGGSRTCHKCNEEGHFARECPNA 482
Score = 31.5 bits (68), Expect = 0.70
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKA 627
CY+C GH+++ECP A
Sbjct: 521 CYKCNETGHFARECPNA 537
Score = 31.5 bits (68), Expect = 0.70
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKA 627
CY+C GH+++ECP A
Sbjct: 603 CYKCNETGHFARECPNA 619
Score = 31.1 bits (67), Expect = 0.93
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNG 606
G C++C + GH+++ECP NG
Sbjct: 548 GGSSDSTCFKCQQTGHFARECPNESAAGENG 578
Score = 30.7 bits (66), Expect = 1.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 680 QCYRCGRGGHWSKECPKALG 621
+C++C GH+++ECP + G
Sbjct: 488 KCFKCNESGHFARECPNSGG 507
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDR 594
G C++C + GH+++ECP +G R +
Sbjct: 630 GGSSDSTCFKCQQTGHFARECPNESAAGEDGDRPK 664
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 31.5 bits (68), Expect = 0.70
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
C+ CG GHW++ CP
Sbjct: 536 CFHCGMRGHWARSCP 550
>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECP 633
+QRP C CG GHW ++CP
Sbjct: 1041 QQRPNEQQRGSCRCCGAPGHWWRDCP 1066
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 31.5 bits (68), Expect = 0.70
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKA 627
CY+C GH+++ECP A
Sbjct: 26 CYKCNETGHFARECPNA 42
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDR 594
G C++C + GH+++ECP +G R +
Sbjct: 53 GGSSDSTCFKCQQTGHFARECPNESAAGEDGDRPK 87
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECPK 630
G P+ C RC GH KEC K
Sbjct: 198 GQPQSCLRCSEIGHGVKECTK 218
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -3
Query: 689 DPEQCYRCG--RGGHWSKECP 633
DPE C+ CG RG H KECP
Sbjct: 136 DPETCFGCGDRRGPHPWKECP 156
>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Frame = -3
Query: 713 VRQRPGMGDPE---QCYRCGRGGHWS--KECPKALGPDRN 609
V Q+ G+ + + +CYRCGR GH S K C KALG N
Sbjct: 184 VEQQSGISNVKSEVECYRCGRKGHRSSDKVC-KALGKKCN 222
>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
Length = 601
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWS--KECPKALGPDRN 609
+CYRCGR GH S K C KALG N
Sbjct: 120 ECYRCGRKGHRSSDKVC-KALGKKCN 144
>SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWS--KECPKALGPDRN 609
+CYRCGR GH S K C KALG N
Sbjct: 284 ECYRCGRKGHRSSDKVC-KALGKKCN 308
>SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWS--KECPKALGPDRN 609
+CYRCGR GH S K C KALG N
Sbjct: 478 ECYRCGRKGHRSSDKVC-KALGKKCN 502
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWS--KECPKALGPDRN 609
+CYRCGR GH S K C KALG N
Sbjct: 542 ECYRCGRKGHRSSDKVC-KALGKKCN 566
>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
Length = 388
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWS--KECPKALGPDRN 609
+CYRCGR GH S K C KALG N
Sbjct: 196 ECYRCGRKGHRSSDKVC-KALGKKCN 220
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 599 RGNRCGRGPAPSGTPWTSG-PRGHSGSTARG 688
RG+R RGP PSG P + G P GH G G
Sbjct: 327 RGDRGPRGP-PSGVPTSGGPPPGHQGLRPSG 356
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 406 EELAVTSFLRPYAANPCHPCLIYLHCG 326
E LA TS + P A PCHP +Y G
Sbjct: 157 EHLAHTSGIFPIALTPCHPLDVYCDLG 183
>SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 431
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 406 EELAVTSFLRPYAANPCHPCLIYLHCG 326
E LA TS + P A PCHP +Y G
Sbjct: 225 EHLAHTSGIFPIALTPCHPLDVYCDLG 251
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECPK 630
G P C RC + GH+ K+C +
Sbjct: 226 GQPPSCVRCSQIGHYVKDCTR 246
>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
Length = 283
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC---PKALGPDRNGFRD 597
+C+ CG GH S C PK L P+ G ++
Sbjct: 194 KCFICGETGHLSSSCPDNPKGLYPEGGGCKE 224
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 602 GNRCGRGPAPSGTPWTSGPRG-HSGSTA 682
G G+ APSG+ W P G H+GS A
Sbjct: 389 GEAGGQAQAPSGSEWAEQPNGDHNGSHA 416
>SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046)
Length = 338
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -3
Query: 713 VRQRPGMGDPE---QCYRCGRGGHWSKEC 636
V+Q+P P+ +C+RC R GH + +C
Sbjct: 74 VQQKPDSAGPKFDGRCHRCNRQGHKAADC 102
>SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05)
Length = 437
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKE 639
R+ G + C RCG GH+SKE
Sbjct: 176 REEKEKGKGKHCNRCGMEGHFSKE 199
>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C CG+GGH++K C
Sbjct: 199 CNNCGKGGHYAKVC 212
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC--PKALGPDRNG 606
+C CG+ HW+K C K GP G
Sbjct: 246 KCSNCGKPNHWAKVCRSTKPQGPTPRG 272
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC--PKALGPDRNG 606
+C CG+ HW+K C K GP G
Sbjct: 72 KCSNCGKPNHWAKVCRSTKPQGPTPRG 98
>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
Length = 411
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 406 EELAVTSFLRPYAANPCHPCLIYLHCG 326
E A TS + P A PCHP +Y G
Sbjct: 287 EHFAHTSGIFPIALTPCHPLDVYCDLG 313
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 711 PAAXGHGRPRAVLPLWPRGPL 649
P A GHGRPR +P GP+
Sbjct: 997 PMAFGHGRPRGDVPAHHGGPI 1017
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKECPKALGPDR 612
PG QC C G + ++ECP + G R
Sbjct: 386 PGCRYTHQCAYCENGNYPARECPSSAGRKR 415
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC--PKALGPDRNG 606
+C CG+ HW+K C K GP G
Sbjct: 233 KCSNCGKPNHWAKVCRSTKPQGPTPRG 259
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 711 PAAXGHGRPRAVLPLWPRGPL 649
P A GHGRPR +P GP+
Sbjct: 130 PMAFGHGRPRGDVPAHHGGPI 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,536,284
Number of Sequences: 59808
Number of extensions: 399166
Number of successful extensions: 1742
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -