Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24r
(715 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein p... 29 0.11
AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein p... 28 0.25
AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein. 28 0.33
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 28 0.33
AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein p... 27 0.44
AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein p... 27 0.58
AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 27 0.77
AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 27 0.77
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ... 26 1.0
AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein p... 26 1.4
AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha ... 25 1.8
AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein p... 25 1.8
AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome convers... 25 2.4
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 25 2.4
AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein p... 24 4.1
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 24 4.1
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 24 5.4
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 23 7.2
M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles ... 23 9.5
>AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 0.11
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKAL 624
G + C +CG+ GH +ECP A+
Sbjct: 345 GQDRSKLCIKCGQEGHKIRECPNAM 369
>AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein
protein.
Length = 492
Score = 28.3 bits (60), Expect = 0.25
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 680 QCYRCGRGGHWSKECPKALGPDR 612
+C++C GH+S++C GPDR
Sbjct: 417 RCFKCWETGHFSRDCK---GPDR 436
>AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein.
Length = 786
Score = 27.9 bits (59), Expect = 0.33
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGPDRNG 606
P C+ CG+ GH ++C + L + +G
Sbjct: 73 PGACFFCGQPGHKKRDCKEFLNRESSG 99
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 27.9 bits (59), Expect = 0.33
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
+CYRC GHW+ +C
Sbjct: 661 RCYRCLELGHWAHDC 675
Score = 25.0 bits (52), Expect = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC---PKAL---GPDRNGFRDRA 591
C RCG GH +K C PK L GP G D A
Sbjct: 685 CIRCGVVGHMAKVCTSQPKCLKCGGPHTIGHPDCA 719
>AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein
protein.
Length = 455
Score = 27.5 bits (58), Expect = 0.44
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKEC 636
+ C RCG GH++K C
Sbjct: 411 QACIRCGADGHYAKSC 426
Score = 27.1 bits (57), Expect = 0.58
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKEC 636
D ++CYRC GH +++C
Sbjct: 386 DRQRCYRCLERGHLARDC 403
>AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein
protein.
Length = 429
Score = 27.1 bits (57), Expect = 0.58
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 713 VRQRPGMGDPEQ-CYRCGRGGHWSKEC 636
+++ P + +Q CYRC GH ++EC
Sbjct: 351 IKEAPAINLQQQRCYRCLERGHIAREC 377
Score = 25.8 bits (54), Expect = 1.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C RCG GH +K+C
Sbjct: 387 CIRCGAEGHLAKDC 400
>AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein
protein.
Length = 476
Score = 26.6 bits (56), Expect = 0.77
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
C+RC + GH ++CP
Sbjct: 204 CHRCRKPGHMKRDCP 218
>AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein
protein.
Length = 499
Score = 26.6 bits (56), Expect = 0.77
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 680 QCYRCGRGGHWSKECPKALGPDR 612
+CYRC + H S++C GPDR
Sbjct: 430 RCYRCWQTDHISQDC---CGPDR 449
>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
chain protein.
Length = 1024
Score = 26.2 bits (55), Expect = 1.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTA-RGRP-CPXAAGH 715
P P G P GP+G G RG P P + G+
Sbjct: 106 PGPKGNPGLRGPKGERGGMGDRGDPGLPGSLGY 138
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 629 PSGTPWTSGPRGHSGSTARGRP 694
P G P GP GH G A GRP
Sbjct: 159 PKGEPGPKGPAGHPG--APGRP 178
Score = 23.8 bits (49), Expect = 5.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 635 GTPWTSGPRGHSGSTARGRPCP 700
G SGP+G +G GRP P
Sbjct: 332 GLEGPSGPKGDAGVPGYGRPGP 353
>AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein
protein.
Length = 344
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDRN 609
+ ++CY+C + GH S C + PDR+
Sbjct: 273 EEQKCYKCWKVGHTSYHCRE---PDRS 296
Score = 23.0 bits (47), Expect = 9.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKAL 624
C++CG GH + C ++
Sbjct: 299 CWKCGLSGHKKQACTNSV 316
>AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha 1
chain precursor protein.
Length = 801
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P G P G +G SGS G P P
Sbjct: 455 PGPEGMPGDKGDKGESGSV--GMPGP 478
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P G P GP G SG R P
Sbjct: 630 PGPKGEPGLLGPPGPSGEPGRDAEIP 655
Score = 24.2 bits (50), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSG 673
P SG P GPRG++G
Sbjct: 189 PGLSGLPGNPGPRGYAG 205
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 614 GRGPAPSGTPWTSGPRGHSG 673
G G G P GPRG+ G
Sbjct: 404 GGGEGRPGAPGPKGPRGYEG 423
Score = 23.0 bits (47), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 632 SGTPWTSGPRGHSGSTARGRP 694
+GT T+GP+G G RG P
Sbjct: 295 TGTTTTTGPKGEKGD--RGEP 313
>AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein
protein.
Length = 468
Score = 25.4 bits (53), Expect = 1.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
+CYRC GH S++C
Sbjct: 405 RCYRCLERGHVSRDC 419
Score = 23.0 bits (47), Expect = 9.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C RCG GH + C
Sbjct: 429 CIRCGTSGHLAATC 442
>AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome conversion
enzyme protein.
Length = 462
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 637 ARRRWAPTATVSAIERSAAIPTLR--RRRHPSFAI 539
ARRRW +T++ ++ S P + +P+FA+
Sbjct: 69 ARRRWGIPSTLNVVDLSPPFPNTNVILKPYPNFAL 103
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 25.0 bits (52), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 713 VRQRPG-MGDPEQCYRCGRGGHWSKEC 636
VR+ P + +C+RC GH +EC
Sbjct: 223 VREAPKPSAESRRCFRCLERGHMVREC 249
Score = 23.0 bits (47), Expect = 9.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -3
Query: 713 VRQRPGMGDPEQCYRCGRGGHWSKEC 636
VR+ G C RCG H + C
Sbjct: 246 VRECQGTNRSSLCIRCGAANHKAVNC 271
>AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein
protein.
Length = 285
Score = 24.2 bits (50), Expect = 4.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
QCYRC GH + C
Sbjct: 213 QCYRCYEYGHTAARC 227
Score = 24.2 bits (50), Expect = 4.1
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 586 PNARSRKPLR-SGPSAFGHSLDQ 651
P R RK L GP A GHSL Q
Sbjct: 247 PCTRERKCLGCEGPDAIGHSLGQ 269
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 24.2 bits (50), Expect = 4.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C RCG GH +++C
Sbjct: 500 CIRCGSEGHKARDC 513
Score = 23.0 bits (47), Expect = 9.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKEC 636
++CYRC GH + C
Sbjct: 475 QRCYRCLERGHLAHAC 490
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 23.8 bits (49), Expect = 5.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
+CYRC GH +++C
Sbjct: 550 RCYRCLEHGHNARDC 564
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 23.4 bits (48), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C+ C R GH ++EC
Sbjct: 377 CFNCLRKGHSAREC 390
>M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 574
Score = 23.0 bits (47), Expect = 9.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
C RCG GH ++ C
Sbjct: 531 CIRCGLTGHKARSC 544
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,667
Number of Sequences: 2352
Number of extensions: 12790
Number of successful extensions: 68
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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