Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24r
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 38 0.007
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 36 0.038
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 35 0.066
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 35 0.066
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 35 0.066
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.27
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.27
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 32 0.35
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 32 0.47
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.47
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.47
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.47
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 31 0.82
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 31 1.1
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 30 1.4
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 1.4
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 1.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 1.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 1.9
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 1.9
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.5
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 29 2.5
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 2.5
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 3.3
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 29 3.3
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical ... 29 4.4
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 28 5.8
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 28 5.8
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 28 5.8
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.6
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 28 7.6
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 7.6
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 28 7.6
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 7.6
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 28 7.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 7.6
AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical ... 28 7.6
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNG 606
QR G G CY CG GH+S++CP A +G
Sbjct: 59 QRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSG 92
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPK 630
R G G CY C GH+S++CPK
Sbjct: 28 RRGGGGGSTCYNCQETGHFSRDCPK 52
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKECPKA 627
++CY CGR GH S+EC ++
Sbjct: 107 QKCYNCGRSGHISRECTES 125
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECP 633
G + ++CY+C GH S++CP
Sbjct: 126 GSAEEKRCYQCQETGHISRDCP 147
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALGPDRNGFRDRAFGRDXXXXXXXXPFLRD 540
CY+C + GH S+ CP G G R G F RD
Sbjct: 6 CYKCQQPGHISRNCPN--GESDGGRRGGGGGSTCYNCQETGHFSRD 49
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPKALG-PDRNG 606
R G G P C+ C GH S+ CPK +G D +G
Sbjct: 161 RRGRGGPGHCFHCQEHGHISRMCPKKVGETDEHG 194
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 585
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 603
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 585
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 603
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 585
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 603
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P+G GP GH GS+ GRP P
Sbjct: 223 PGPAGPRGAPGPAGHPGSSGGGRPGP 248
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECP 633
+R M E C RC GHW ECP
Sbjct: 657 ERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH SKEC K P
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVP 591
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECP 633
+R M E C RC GHW ECP
Sbjct: 657 ERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH SKEC K P
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVP 591
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECPKAL 624
R+RP P QC+ CG GH S CPK +
Sbjct: 603 RERP----PPQCFTCGEMGHISTYCPKRI 627
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = -3
Query: 710 RQRPGM--GDPEQ---CYRCGRGGHWSKECPKAL 624
R++PG+ G P C RC + GHW K CP L
Sbjct: 142 RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCPMKL 175
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 585
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 585
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKALGP 618
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 585
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Frame = -3
Query: 710 RQRPGM--GDPEQ---CYRCGRGGHWSKECP 633
R++PG+ G P C RC + GHW K CP
Sbjct: 142 RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCP 172
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPKA 627
R G P CY+C GH SK+CP++
Sbjct: 304 RKGNYRPPYCYKCKVVGHVSKDCPQS 329
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -1
Query: 502 TMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEE 401
T+ VHG I+H C+SDA + ++ +N +D+++
Sbjct: 785 TVNVHGKIVHSACASDAARSLDNSSFFNDSDIKK 818
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 599 RGNRCGRGPAPSGTPWTSGPRGHSGSTAR-GRP 694
+G CG G + +G P + GP G GS R G P
Sbjct: 109 QGGCCGCGTSAAGPPGSPGPDGQEGSNGRPGAP 141
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 611 CGRGP-APSGTPWTSGPRGHSGSTAR-GRPCPXAAG 712
CG GP PSG P T G G+ GS G P A G
Sbjct: 138 CGVGPPGPSGAPGTDGNPGNDGSPGNPGTPGQDAVG 173
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 620 GPAPSGTPWTSGPRGHSGSTARGRPCP 700
GP P+G P GP G GS +P P
Sbjct: 250 GPGPAGPPGPPGPPGQDGSGGAAQPGP 276
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 614 GRG-PAPSGTPWTSGPRGHSGSTARGRPCPXAAG 712
GRG P PSG P + GP G G G P AG
Sbjct: 202 GRGLPGPSGAPGSQGPPGAPGQPGSGN-APGPAG 234
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P+G P +GP G+ G+ G P P
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGP 245
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P+G P +GP G+ G+ G P P
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGP 245
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P+G P +GP G+ G+ G P P
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGP 245
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P+G P +GP G+ G+ G P P
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGP 245
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 602 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPXAAG 712
GN+ GP P G P +GP G +G+ G P P A G
Sbjct: 176 GNKGPAGPPGPGGKPGPAGPPGENGN--NGEPQPGAPG 211
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPK 630
RP G P +C+RC H + +CP+
Sbjct: 75 RPTPGMPNRCFRCQSDEHRTPQCPQ 99
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPK 630
RP G P +C+RC H + +CP+
Sbjct: 75 RPTPGMPNRCFRCQSDEHRTPQCPQ 99
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC-PKALGPDRNGFRDRA 591
QC+ C GH ++ C KA R G+ D+A
Sbjct: 575 QCHYCKNVGHMARNCKKKAFAEKRKGYEDQA 605
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P G P T+GP G +G CP
Sbjct: 263 PGPDGNPGTAGPPGKAGGEGEKGICP 288
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 620 GPAPSGTPWTSGPRGHSGSTARGRPCPXAAG 712
GP P+G P +GP G G++ P AAG
Sbjct: 224 GPGPAGPPGPAGPPGPDGASPTA--APGAAG 252
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 614 GRG-PAPSGTPWTSGPRGHSGSTARGRPCPXAAG 712
GRG P PSG P GP G G G P AG
Sbjct: 202 GRGLPGPSGAPGPQGPPGAPGQPGSGN-APGPAG 234
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P G P T+GP G +G CP
Sbjct: 262 PGPDGNPGTAGPPGKAGGEGEKGICP 287
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Frame = +2
Query: 599 RGNRCGRG-PAPSGTPWTSGPRG-------HSGSTARGRP-CPXAAGH 715
RG + RG P PSG P GP G GS G+P P A GH
Sbjct: 202 RGGQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQPGAPGAPGH 249
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 590 TLDRGNRC-GRGPAPSGTPWTSGPRGHSGSTAR-GRP 694
T DRG G P P+G P GPRG SG G+P
Sbjct: 196 TGDRGKVLNGAPPGPTGPPGKVGPRGLSGGKGHDGKP 232
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 620 GPAPSGTPWTSGPR---GHSGSTARGRPCP 700
GP P+G P +GP G SGS + G P P
Sbjct: 234 GPGPAGPPGPAGPAGPDGQSGSGSAGGPGP 263
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 588
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 588
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 588
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical
protein Y37H9A.6 protein.
Length = 138
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 457 DAIQLEEHHEGWNWADLEE 401
D +QL H+ W W +LE+
Sbjct: 96 DDVQLSHEHQNWKWCELED 114
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPK 630
CY+CG GH++ C K
Sbjct: 252 CYKCGEKGHYANRCHK 267
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P GTP G G GS A PCP
Sbjct: 257 PGPMGTPGGPGEPGIPGSDAAYCPCP 282
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 267 WGASAAVHRIIGRSHGTHSAPQWR*IRHG 353
WG + VH+ + S TH P+W I HG
Sbjct: 167 WGVQSCVHQFVFPSGSTH--PRWPGIPHG 193
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 421 NWADLEELAVTSFL-RPYAA-NPCHPCLIYLHCGAEW 317
N +L + T+ + RPY A NP PC++ HC +
Sbjct: 527 NEPELHRIVTTAMMHRPYGAQNPHSPCMVDGHCSKRY 563
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PAPSGTPWTSGPRGHSGSTARGRPCP 700
P P G P +GP G G G+P P
Sbjct: 267 PGPQGPPGLAGPDGQPGHGGGGQPGP 292
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 599 RGNRCGRG-PAPSGTPWTSGPRGHSGSTAR--GRPCPXAAG 712
+G + RG P PSG P GP G G + G P AG
Sbjct: 192 QGGQRSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 620 GPAPSGTPWTSGPRGHSGSTARGRPCPXAAGH 715
GP G P GP GH G P P GH
Sbjct: 180 GPGQPGQPGPHGPNGHPGKPGSQGP-PGPPGH 210
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 602 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPXAAG 712
GN+ GP P G P +GP G +G G P P + G
Sbjct: 174 GNKGPAGPPGPGGKPGPAGPPGENG--RNGEPQPGSPG 209
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +2
Query: 602 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPXAAG 712
G R GP PSG P GP G G P AG
Sbjct: 168 GARGSPGPRGPSGNPGADGPAGQLGPQGGSNVAPSPAG 205
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +2
Query: 602 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPXAAG 712
G R GP PSG P GP G G P AG
Sbjct: 221 GARGSPGPRGPSGNPGADGPAGQLGPQGGSNVAPSPAG 258
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 596 DRGNRCGRGPAPSGTPWTSGPRGHSGSTAR 685
D G R P P G P +GP G G T R
Sbjct: 254 DDGERPLGRPGPRGPPGEAGPEGPQGPTGR 283
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 635 GTPWTSGPRGHSGSTARGRPCP 700
GTP +GP+G G+ A PCP
Sbjct: 256 GTPGQAGPQGAVGADAEYCPCP 277
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 614 GRGPAPSGTPWTSGPRGHSG 673
G P P GTP GP+G SG
Sbjct: 98 GCPPGPPGTPGEQGPQGESG 117
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 614 GRGPAPSGTPWTSGPRGHSG 673
G P P GTP GP+G SG
Sbjct: 98 GCPPGPPGTPGEQGPQGESG 117
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 602 GNRCGRGPAPSGTPWTSGPRGHSGST-ARGRPCP 700
GN P P G P GP+G +G A GRP P
Sbjct: 166 GNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGP 199
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 596 DRGNRCGRGPAPSGTPWTSGPRGHSGSTAR 685
D G R P P G P +GP G G T R
Sbjct: 254 DDGERPLGRPGPRGPPGEAGPEGPQGPTGR 283
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 602 GNRCGRGPAPSGTPWTSGPRGHSGST-ARGRPCP 700
GN P P G P GP+G +G A GRP P
Sbjct: 160 GNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGP 193
>AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical
protein T15B7.8 protein.
Length = 299
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 32 KVKTLSNPFTHLQLSLHYF*NVPKVQPKYQMSFSTTILSY 151
K KT++ F L + L Y NVPK PK+ T +L Y
Sbjct: 232 KTKTITTSFQPLSI-LWYGSNVPKGVPKHTNGNETLVLCY 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,582
Number of Sequences: 27780
Number of extensions: 297391
Number of successful extensions: 1885
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -