Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24r
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 2e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 41 7e-04
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 39 0.004
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.035
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 35 0.047
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 35 0.047
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.047
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 34 0.11
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 33 0.14
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.25
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 32 0.33
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 32 0.43
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 32 0.43
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 32 0.43
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 32 0.43
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.43
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.43
At4g19130.1 68417.m02823 replication protein-related similar to ... 31 0.76
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 31 1.0
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 31 1.0
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 31 1.0
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 1.0
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 1.0
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 1.0
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 31 1.0
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 1.0
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 1.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 1.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.8
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.8
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 2.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.3
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 29 3.1
At2g01930.2 68415.m00128 expressed protein 29 4.0
At2g01930.1 68415.m00127 expressed protein 29 4.0
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 29 4.0
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 5.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 28 5.3
At1g14685.3 68414.m01750 expressed protein 28 5.3
At1g14685.2 68414.m01749 expressed protein 28 5.3
At1g14685.1 68414.m01748 expressed protein 28 5.3
At5g04540.1 68418.m00454 expressed protein 28 7.1
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 7.1
At1g68120.1 68414.m07781 expressed protein 28 7.1
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 9.3
At2g21800.1 68415.m02591 expressed protein 27 9.3
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 600
G G ++C++C R GHW+++CP + G DR FR
Sbjct: 110 GKGTEDECFKCRRPGHWARDCP-STGDDRERFR 141
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 600
G G ++C++C R GHW+++CP + G DR FR
Sbjct: 110 GKGTEDECFKCRRPGHWARDCP-STGDDRERFR 141
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.1 bits (92), Expect = 7e-04
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKECPKA---LGPDRNGFRDRAF------GRDXXXXXXXXPFLRDRMM 531
++C++CGR GHW+++CP A G GF RA GR R+R +
Sbjct: 126 DECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYI 185
Query: 530 XXXXXXXXXXXDRSRFDS-----PRDLFERRYPVGGASRGLELGGSRGARG 393
R RFDS PRD + A R GG R +RG
Sbjct: 186 DDRYDGAARYGARDRFDSREAYIPRDRYASDRYAAPADR--FAGGDRYSRG 234
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 38.7 bits (86), Expect = 0.004
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKA 627
P C++CGR GHWS++CP +
Sbjct: 5 PTGCFKCGRPGHWSRDCPSS 24
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPK-ALGP 618
D +CY CG GH S ECPK LGP
Sbjct: 150 DKSRCYECGDEGHLSYECPKNQLGP 174
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 35.1 bits (77), Expect = 0.047
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPKA 627
+ +CYRCG GH+++ECP +
Sbjct: 323 EASECYRCGEEGHFARECPNS 343
Score = 31.5 bits (68), Expect = 0.57
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKA 627
CYRC GH+++ECP +
Sbjct: 358 CYRCNGSGHFARECPNS 374
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 35.1 bits (77), Expect = 0.047
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
+CY+CG+ GHWS++C
Sbjct: 305 ECYKCGKQGHWSRDC 319
Score = 35.1 bits (77), Expect = 0.047
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
CY+CG+ GHWS++C
Sbjct: 342 CYKCGKAGHWSRDC 355
Score = 33.1 bits (72), Expect = 0.19
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
CY+CG+ GHW+++C
Sbjct: 239 CYKCGKEGHWARDC 252
Score = 33.1 bits (72), Expect = 0.19
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALG 621
C++CG+ GHWS++C G
Sbjct: 270 CFKCGKPGHWSRDCTAQSG 288
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 710 RQRPGMG-DPEQCYRCGRGGHWSKECPKALGPDRNG 606
R RP G C++CG+ GH+++ECP D G
Sbjct: 108 RSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGG 143
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 600
R R G+ C+ CG GH + ECP A DR GFR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSARVADR-GFR 255
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKEC 636
G G+ CY+CG+ GH+++EC
Sbjct: 275 GGGNDNACYKCGKEGHFAREC 295
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 683 EQCYRCGRGGHWSKECPKALGPDRNG 606
E CY CG GH++++C A D+ G
Sbjct: 132 EGCYNCGDTGHFARDCTSAGNGDQRG 157
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 600
R G G CY CG GH +++C P R ++
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQ 257
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECPK--ALGPDRNG 606
G + CY CG GH++++C + A G R+G
Sbjct: 195 GGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G CY CG GH SK+C
Sbjct: 97 GGGSGCYNCGELGHISKDC 115
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 704 RPGMGDPE-QCYRCGRGGHWSKECPKALGPDRNGFRDRA 591
R G G + +CY CG GH+++EC G R + R+
Sbjct: 91 RGGRGGSDLKCYECGETGHFARECRNRGGTGRRRSKSRS 129
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 32.3 bits (70), Expect = 0.33
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKEC 636
DP CY+CG+ GH+++ C
Sbjct: 32 DPRACYKCGKLGHFARSC 49
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALGPDRNG--FRDRAFGRD 579
C CG GH+++ CP LG +R F +R RD
Sbjct: 94 CKICGESGHFTQGCPSTLGANRKSQEFFERVPARD 128
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKECPKALG 621
R G G C++CG GH ++EC + G
Sbjct: 129 RGGGGGDNSCFKCGEPGHMARECSQGGG 156
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKEC 636
G G CY CG GH++++C
Sbjct: 175 GGGGGLSCYSCGESGHFARDC 195
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNG 606
G G CY CG GH +K+C G +R G
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYG 186
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECPKALGPDRNG 606
G +CY CG GH++++C ++ G + G
Sbjct: 127 GGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKEC 636
G G +C+ CG+ GH+++EC
Sbjct: 277 GGGGSNKCFICGKEGHFAREC 297
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 710 RQRPGMGDPEQCYRCGRGGHWSKECPKALG 621
++ G C+ CG GH +K+C G
Sbjct: 85 KENSSRGSGGNCFNCGEVGHMAKDCDGGSG 114
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPK 630
G G CY CG GH +++C +
Sbjct: 247 GGGGGRACYECGGTGHLARDCDR 269
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECPKALG 621
G E+C+ CG+ GH++ +CP G
Sbjct: 260 GQQEKCFVCGQTGHFASDCPGKSG 283
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDR 612
+R G+ D +CY CG GH+++EC + G R
Sbjct: 82 RRGGIED-SKCYECGELGHFARECRRGRGSVR 112
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 707 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDR 612
+R G+ D +CY CG GH+++EC + G R
Sbjct: 82 RRGGIED-SKCYECGELGHFARECRRGRGSVR 112
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 698 GMGDPEQCYRCGRGGHWSKECPKALGPDRNG 606
G G C CG GH S +CP A P G
Sbjct: 405 GGGATTSCNVCGNSGHVSAKCPGATKPQEQG 435
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 677 CYRCGRGGHWSKEC 636
CYRCG HW+K C
Sbjct: 278 CYRCGMDDHWAKTC 291
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 30.7 bits (66), Expect = 1.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
C+RC + GHW +CP
Sbjct: 11 CFRCRQAGHWINDCP 25
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 704 RPGMGDPEQCYRCGRGGHWSKEC 636
R G G CY CG GH++++C
Sbjct: 176 RGGGGGGGSCYSCGESGHFARDC 198
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKALG 621
CY+CG GH +++C + G
Sbjct: 131 CYKCGEPGHMARDCSEGGG 149
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKEC 636
PG G +C+ CG GHW+++C
Sbjct: 96 PGSG---RCFNCGVDGHWARDC 114
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 680 QCYRCGRGGHWSKECPKALGPDR 612
+CYRCG GH + C + P +
Sbjct: 122 KCYRCGERGHIERNCKNSPSPKK 144
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKEC 636
PG G +C+ CG GHW+++C
Sbjct: 55 PGSG---RCFNCGVDGHWARDC 73
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 680 QCYRCGRGGHWSKECPKALGPDR 612
+CYRCG GH + C + P +
Sbjct: 81 KCYRCGERGHIERNCKNSPSPKK 103
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKEC 636
PG G +C+ CG GHW+++C
Sbjct: 55 PGAG---RCFNCGVDGHWARDC 73
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKEC 636
PG G +C+ CG GHW+++C
Sbjct: 66 PGAG---RCFNCGVDGHWARDC 84
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKEC 636
PG G +C+ CG GHW+++C
Sbjct: 96 PGAG---RCFNCGVDGHWARDC 114
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G +CY CG GH+++EC
Sbjct: 93 GSDLKCYECGESGHFAREC 111
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 30.3 bits (65), Expect = 1.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
C+ C + GHW+K CP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPK 630
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPK 630
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 689 DPEQCYRCGRGGHWSKECPK 630
DP +C+ CG H +ECP+
Sbjct: 239 DPPRCFNCGGYSHSLRECPR 258
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 677 CYRCGRGGHWSKECPKAL 624
CY CG GH S CP L
Sbjct: 576 CYECGEKGHLSSACPNKL 593
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
CY CG GH S CP
Sbjct: 397 CYECGEKGHLSTACP 411
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 677 CYRCGRGGHWSKECP 633
CY CG GH S CP
Sbjct: 481 CYECGEKGHLSTACP 495
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 701 PGMGDPEQCYRCGRGGHWSKECP 633
P M D +CY CG GH S CP
Sbjct: 357 PYMVDCAKCYSCGGVGHVSMYCP 379
>At2g01930.2 68415.m00128 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At2g01930.1 68415.m00127 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 101 KVQPKYQMSFSTTILSYINK-AHIFLTATDLAFRAFCHQKYLC*NLHT 241
K+ P+ +SFSTTI S+ K + + +T + +F KY+ +LH+
Sbjct: 118 KLWPQGNISFSTTIQSFSKKLSELDITIRRMIMESFGLDKYIDEHLHS 165
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 680 QCYRCGRGGHWSKEC 636
QC +C + GHW+ EC
Sbjct: 99 QCQKCFQAGHWTYEC 113
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKECP 633
G+ C+ CG GH+ +CP
Sbjct: 156 GEKGACWICGEDGHYKNDCP 175
>At1g14685.3 68414.m01750 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.2 68414.m01749 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.1 68414.m01748 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 478 LHGTCSSDAIQLEEHHEGWNW 416
+HGT SSD H GW W
Sbjct: 371 MHGTTSSDGTSSFLRHGGWTW 391
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G E+C+ CG+ GH++ C
Sbjct: 259 GQQERCFLCGQMGHFASNC 277
>At1g68120.1 68414.m07781 expressed protein
Length = 270
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 692 GDPEQCYRCGRGGHWSKEC 636
G P+QCYR G GG W C
Sbjct: 186 GMPQQCYRWGCGG-WQSAC 203
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 686 PEQCYRCGRGGHWSKECPKAL 624
P +C CGR GH C K L
Sbjct: 312 PPKCLNCGRYGHLLSRCSKPL 332
>At2g21800.1 68415.m02591 expressed protein
Length = 475
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 35 VKTLSNPFTHLQLSLHYF*NVPKVQPKYQMSFS 133
V L++ H Q+ L +PKVQP+Y ++ S
Sbjct: 362 VVRLTSSLAHCQVRLKVLVAIPKVQPRYAIAVS 394
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,372
Number of Sequences: 28952
Number of extensions: 279574
Number of successful extensions: 1082
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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