Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24f
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 68 9e-13
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 61 1e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 56 5e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 8e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 5e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 1e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 43 3e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 4e-05
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 42 7e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 42 7e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.003
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.003
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.013
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.013
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.024
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 33 0.031
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.041
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.17
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.17
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.22
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.22
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.29
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.67
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 28 0.89
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.2
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.2
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.0
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.0
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 2.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 4.7
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 4.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 6.2
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 8.3
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 8.3
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 68.1 bits (159), Expect = 9e-13
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+++G L TEA L LF G V + R+ Y +V+ N + G +A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 309 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 482
N L+ G+ +I + + T +F+ NL + + F FG ++ C +
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 483 ------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ YGFVH D+ N AI+ +NGM+++ + + V
Sbjct: 202 DELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 58.0 bits (134), Expect = 1e-09
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 299
GT +FI NL L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 300 QNLNGELVHGQAIKIEAAKSRK-------APSTPTTKIFVGNLTDKTRAPEVRELFQKFG 458
+++NG L++ + + + SR+ A T +++ NL + E +LF +FG
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 459 TVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ +V R +GFV+ A+ ELN G+ + V
Sbjct: 286 EITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 55.6 bits (128), Expect = 5e-09
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
++I NL + TE + LF ++G + +V R +GFV+ N + ++A+ LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 312 GELVHGQAIKI-----------------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 440
+ G+ + + E K K +F+ NL D+ ++
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 441 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
F FGT+ I+ + +GFV + N A+ E+N M+ G+P+ V L+
Sbjct: 383 EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 33.5 bits (73), Expect = 0.024
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+FI NL D+ + L+ F +GT+ I+ + +GFV + +A+ +N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 312 GELVHGQAIKIEAAKSRK 365
++ G+ + + A+ ++
Sbjct: 426 QRMLAGKPLYVALAQRKE 443
Score = 31.9 bits (69), Expect = 0.072
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Frame = +3
Query: 351 AKSRKAPS--TPTT-KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGF 497
A S PS PT+ ++VG L + ELF G V + R+ Y +
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 498 VHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
V+ D A+ ELN ++ G+P ++ S
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 61.3 bits (142), Expect = 1e-10
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 329
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 330 QAIKIEAAKSRK---------------APSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
I +E A+ + P ++ V NL++ +++++ +K G
Sbjct: 65 SRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEP 124
Query: 465 VECDIVR---NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
D R G V D+ +A+ LNG ++ GQ + ++
Sbjct: 125 TFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 563
T++FVG + + ++ + F+ +G +++C ++ +GFV ++ D D + + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 564 GQPMKVQ 584
G + V+
Sbjct: 64 GSRIVVE 70
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVGREAIQNLNGE 317
F++ + NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 318 LVHGQAIKIEA---AKSRKAPSTPT 383
++ GQA+ + A + P P+
Sbjct: 158 VIKGQAVTLREDPDAANEPLPEVPS 182
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 55.6 bits (128), Expect = 5e-09
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 482
+ + G+ I + A R+ T K+FVG + E R F +FG V++ ++
Sbjct: 224 EHH--LDGKIIDPKRAIPRE-EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMM 280
Query: 483 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
R +GFV + V +A + + G+P++V+
Sbjct: 281 DKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVK 320
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.4 bits (110), Expect = 8e-07
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
N + +G+ + ++ AK R P +PT ++G
Sbjct: 163 NSQEFYGRVLNVQKAK-RSRPHSPTPGKYMG 192
Score = 38.3 bits (85), Expect = 8e-04
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Frame = +3
Query: 291 EAIQNLNGELV--HGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKF 455
E +Q++N + V + ++ ++ + + AP +FV + + + E++++F KF
Sbjct: 65 EPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKF 124
Query: 456 GTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
GTV I+ R +GF+ + AI LN G+ + VQ
Sbjct: 125 GTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQ 175
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 45.6 bits (103), Expect = 5e-06
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ NL+ +T + DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPT---------------TKIFVGNLTDKTRAPE-VRE 440
+ +HG+ ++++ A RK T ++ + NL + P+ +
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 441 LFQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
F KFG V E I + + FV + +A+ LNG +DG+P+ V
Sbjct: 127 HFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKEL 545
+FV NL +T+ ++ F G + +V N YGFV D A KEL
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 546 NGMMVDGQPMKVQLS 590
+ G+ +++ +
Sbjct: 67 KNKKLHGRILRLDFA 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.4 bits (100), Expect = 1e-05
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Frame = +3
Query: 192 DLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLNGELVHGQAI---- 338
DL+ LF + G+V+ DI N G V M + + AIQ L+ G+ +
Sbjct: 198 DLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 339 ------KIEAAKSRKAPSTPTTK-IFVGNLTDKTRAPEVRELFQKFGTVVECDIV----- 482
KIE P P + I+VGNL T + +LF G+V+ I
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTG 317
Query: 483 --RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ +G V + D +I++LNG G+P+++
Sbjct: 318 RSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 312 GELVHGQAIKIEAAK-SRKAPSTPT 383
G G+ +++ A + P+ PT
Sbjct: 342 GYRYGGRPLQLSYAHYATPLPAVPT 366
Score = 31.9 bits (69), Expect = 0.072
Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 308
++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 309 NGELVHGQAIKIE----------------AAKSRKAPSTPTTKIFVGNLTD--------- 413
+ + G+ + I +A S S P ++FVGN++
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 414 KTRAP------EVRELFQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGM 554
+T P ++++LF++ G+V+ DI R G V + + + AI+ L+
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
Query: 555 MVDGQPMKVQL 587
G+ ++V+L
Sbjct: 247 DFMGRTLEVRL 257
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 99 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHME 272
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 273 NEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 380
N Q AI L G + I++ +++ + P
Sbjct: 347 NRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAP 382
Score = 38.7 bits (86), Expect = 6e-04
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+++G L TEA ++ ++ G V+ ++RN Y FV + A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 309 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ------ 449
N + + G K+ A + + IFVG+L+ +V LF
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 450 ---KFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
K T + ++ R YGFV D A+ E+ G + +P++V L+
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
Score = 32.3 bits (70), Expect = 0.054
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELN 548
T + +FVG L+ E++ LFQ FG +V I + GFV AI +L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 549 G 551
G
Sbjct: 360 G 360
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 299
T +F+G LS + L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 300 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 428
+ + G+ + ++ + R A P + GN D+ P
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEP 364
Score = 29.1 bits (62), Expect = 0.51
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 308
+F+GNLS TE DL F G + + ++ +G+V + ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 309 NGELVHGQAIKIEAAKSR 362
NG + G+ +++ + R
Sbjct: 427 NGHFIAGRPCRLDFSTPR 444
Score = 28.3 bits (60), Expect = 0.89
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 527
S T +FVG L+ + + F+++GT+V ++ + YG+V +
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 528 DAIKELNGMMVDGQPMKVQLS 590
A+ +DG+ + + LS
Sbjct: 319 AAVAANGTKEIDGRMVNLDLS 339
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 150 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 326
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 327 GQAIKIEAAKSRK 365
GQ + +E +K +K
Sbjct: 424 GQKLHLEISKIQK 436
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMV 560
+++F+G+L K+ + + ++F+ +G + + + NYGFV D A+ G V
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 561 DGQPMKVQLS 590
GQ + +++S
Sbjct: 423 RGQKLHLEIS 432
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.9 bits (94), Expect = 7e-05
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 38/189 (20%)
Frame = +3
Query: 108 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGF 260
H+N S+ P F IF+G+L T ++DL F Y + I+ R YGF
Sbjct: 172 HNNFVSRDP---EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228
Query: 261 VHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS---------TPT---------- 383
V +E+ + A+ ++ G L G+ ++I A + S PT
Sbjct: 229 VRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQD 288
Query: 384 --------TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDA 533
T +FVG L +++ FQ FG ++ I + GFV A
Sbjct: 289 LCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKA 348
Query: 534 IKELNGMMV 560
I + G +V
Sbjct: 349 INTMQGALV 357
Score = 30.3 bits (65), Expect = 0.22
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Frame = +3
Query: 249 NYGFVHMENEQVGREAIQNLNGELVHGQ--AIKIEAAK------SRKAPSTPTTKIFVGN 404
+Y FV + A+ N ++ G K+ A + P IFVG+
Sbjct: 129 SYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGD 188
Query: 405 LTDKTRAPEVRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMM 557
L T ++ F+ + + I+ R YGFV + + A+ + G +
Sbjct: 189 LLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYL 248
Query: 558 VDGQPMKVQLS 590
G+P+++ ++
Sbjct: 249 CQGRPLRISVA 259
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 305
F++F+GNL + + L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTTK 389
NG+ + + +K+ A S P+ K
Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNEVNEK 117
Score = 32.7 bits (71), Expect = 0.041
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKEL 545
++FVGNL + + + F ++ ++V+ +VR+ +GFV + A +E
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 546 NGMMVDGQPMKV 581
NG + +P+K+
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 39.9 bits (89), Expect = 3e-04
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 308
+ +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 309 NGELVHGQAIKIEAAKSRK-----AP---STP----------TTKIFVGNLTDKTRAPEV 434
G ++I + + KS K +P TP T ++V L + E+
Sbjct: 133 QGAFCLKRSILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQEL 192
Query: 435 RELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
R F FG ++ + N G + AI E+N + G +++QLS
Sbjct: 193 RSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHG--VRIQLS 242
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 290
F++F+G LS T ++++R LFE GTV + I VR FV N++
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103
Query: 291 EAIQNLNGELVHGQAIKIEAAK 356
+AI+ LNG+ + + I ++ A+
Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVND 530
++FVG L+ T+ E+R LF+ GTV + I VR FV + DV+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 531 AIKELNGMMVDGQPMKVQ 584
AI+ LNG +D + + VQ
Sbjct: 105 AIETLNGKTLDDREIVVQ 122
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 246 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 365
R +GFV N + AI+ +NG+ V + +++A R+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 308
+F+GNL + TE ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 33.5 bits (73), Expect = 0.024
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKEL 545
+F+GNL + E+RE + FG + + IV RN FVH A++EL
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Frame = +3
Query: 297 IQNLNGELVHGQAIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 449
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 450 KFGTVVECDIVR--NYGFVHLDATGDVNDAIKEL 545
+FG + + R N FV+ + +AI +
Sbjct: 436 EFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 308
G + I+IGN D T L+ FE++G + + R N FV+ + AI +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = +3
Query: 312 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 465 VECDIV--RNYGFVHLDATGDVNDAIKELNGMMVD 563
I+ +N FVH ++ DAIK + + D
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIKVVRTLSCD 357
Score = 31.5 bits (68), Expect(2) = 0.004
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 311
+FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 308
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
Score = 23.4 bits (48), Expect(2) = 0.004
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 458
+ + +++ +F+GNL KT+ E+ +L + G
Sbjct: 396 DRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIRHGG 433
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Frame = +3
Query: 372 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFVHLDA 512
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSH 471
Query: 513 TGDVNDAIKELNGMM 557
+ AI LNG++
Sbjct: 472 PFEAVQAINTLNGVL 486
Score = 34.7 bits (76), Expect = 0.010
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Frame = +3
Query: 153 IFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQ 302
+F+ NL D L LF K+G + C +I + YGFV + +AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 303 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIF 395
LNG L + + + A+ R+ + IF
Sbjct: 481 TLNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 33.5 bits (73), Expect = 0.024
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 293
I++GNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 294 AIQNLNGELVHGQAIKIE 347
AI +LNG G +K+E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 31.5 bits (68), Expect = 0.095
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = +3
Query: 333 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------- 488
A++ + K++++ I+VGNL ++ ++ ELF+ FG + ++
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDS 62
Query: 489 -----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
+ F+ + ++AI LNG G +KV+
Sbjct: 63 KSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 533
P +FV L T+ ++ +F +FG ++ C ++R+ Y F+ D V A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 534 IKELNGMMVDGQPMKVQLS 590
++ +++D + V S
Sbjct: 302 YFKMQNVLIDDSRIHVDFS 320
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.003
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ L+++ T +L FE+ G V + IVR+ +V +E + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 309 NGELVHGQAIKI---EAAKSRKA-----------PSTPTTKIFVGNLTDKTRAPEVRELF 446
+G+ + G + + EA K+RKA P ++ V N+ +V+ +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 447 QKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 587
+ FG + + R+ +G++ +A++++NG + G+ M+V L
Sbjct: 361 EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL 414
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 311
+ +GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 312 GELVHGQAIKIEAA 353
++ + I++ A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.5 bits (78), Expect = 0.006
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 309 NGELVHGQAIKIEAAKSR 362
G +++G+ I ++ + R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
Score = 31.5 bits (68), Expect = 0.095
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDA 533
P +F+ L+ T+ ++ F ++G + +VRN Y FV + D+ A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 534 IKELNGMMVDGQPMKVQL 587
K G+M++G+ + V +
Sbjct: 158 YKASAGLMLNGRRIVVDV 175
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.013
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 314
+FI NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 34.3 bits (75), Expect = 0.013
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 551
PT ++VGNL A V F +GTV ++ ++ F++ D+ ++ELNG
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNG 644
Query: 552 MMV 560
+
Sbjct: 645 KRI 647
Score = 33.9 bits (74), Expect = 0.018
Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 317
T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
Query: 318 LVH--GQAIKIEAAKSRKAPSTPTTKIFVG---NLTDKTRAPEVRELFQKFGTVVECDIV 482
+ + I AK + S + G ++ + P +RE++ ++V
Sbjct: 646 RIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDDL-----INVV 700
Query: 483 RNYGFVHLDATGDVNDAIKEL 545
+++GF L + +A EL
Sbjct: 701 QSFGFKDLSKIYQILNAACEL 721
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 33.5 bits (73), Expect = 0.024
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPE----VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVND 530
P +FV +L E V++ FQ++G ++ ++++ Y FV T D +
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASK 136
Query: 531 AIKELNGMMVDGQPMKVQ 584
A+ E ++DG+ ++++
Sbjct: 137 ALSEAQNTILDGRHIRIE 154
Score = 32.3 bits (70), Expect = 0.054
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 132 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 293
P + IF+G L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 294 AI 299
A+
Sbjct: 420 AV 421
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 369 PSTPTTKIFVGNLTDKTRAPE--VRELFQKFGTVVECDIV 482
P IFVG L D + +LF K+G V++C I+
Sbjct: 360 PPIDPYSIFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 33.1 bits (72), Expect = 0.031
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -3
Query: 587 QLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRAR 417
QLH ++ H + Q+F+++ ++ R +H + +I L++ +L + ADFG AR
Sbjct: 368 QLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL--KFADFGLAR 422
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.041
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 506
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 296
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 330 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 251
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 30.7 bits (66), Expect = 0.17
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 305
+++ NL+DK + DLR LF YGTVV+ +R V + A++
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 306 LNGELVHGQAIKIEAAKSR 362
L + G+ +KI+ A S+
Sbjct: 66 LKNFIFFGKEMKIQYAHSK 84
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.22
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHME-NEQVGREAIQNLN 311
+F+GNL+ + E L F G++ IVR+ GF +++ + +G + LN
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 312 -GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 467
++ G+ ++I AKS K S +K G+ +T R+L K G +
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSK--RGDEKTRTLQGRARKLIGKAGNAL 382
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 396 VGNLTDKTRAPEVRELFQKFGTV 464
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.29
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Frame = +3
Query: 153 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 302
+++ NL D T ++ L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 303 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGN--LTDKTRAPEVRELFQK 452
LNG +V + I + A+ RK+ + F N +++T + + LF K
Sbjct: 444 TLNGMMVGKKRIFVCFAE-RKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.67
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTV 227
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG----FVHLDATGDVNDAIKELNG 551
T + + NL T + +V FG ++ C + + G V +++L+G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 552 MMVDG 566
+ DG
Sbjct: 160 VTADG 164
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Frame = +3
Query: 252 YGFVHMENEQVGREAIQNLNGELVHGQAIKIE--------AAKSRKAPSTPT--TKIFVG 401
+GFV +++ A+ +NG ++ G ++I+ AA+ RK S+ TKI +
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 402 NLTDKTRAPEVRELFQKFG 458
NL + +V+ L +G
Sbjct: 727 NLPFEATKKDVQSLLGAYG 745
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Frame = +3
Query: 330 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF----GTVVECD------- 476
+A E + S T I+V NL T+ E +++F+ V+
Sbjct: 601 EATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPG 660
Query: 477 --IVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+ +GFV A+ +NG ++DG ++++LS
Sbjct: 661 KYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+F+GN+ +E + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 309 NGELVHGQAIKIE 347
N + + I++E
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTV 227
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +3
Query: 363 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV--------VECDIVRNYGFVHLDATG 518
++P P I V NLT + E+F +G + + ++ + Y ++
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 519 DVNDAIKELNGMMVDGQPMKVQL 587
+A+ ++N +DG+ + V +
Sbjct: 152 QAANAVDKMNNAELDGEELFVSI 174
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 130 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 297
CR+ VL T I ILD SK +V +A+S +T+ C K S P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 9 FCSGVRHVYCVGNSWS 56
FC G+ +YC+G+S++
Sbjct: 97 FCKGIYEIYCIGDSFT 112
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+++GN+ + E + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 309 N 311
N
Sbjct: 67 N 67
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +3
Query: 201 PLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 380
P F Y + D V ++ + G I NG +H ++ E K ++
Sbjct: 45 PTFSPYAVIKNFDEVNRMYYIQVVGNLSGVITIVGGNGSHIHAASVYSETYALGKLVTSN 104
Query: 381 TTKI 392
TTK+
Sbjct: 105 TTKL 108
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 467 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 372
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 592 VDNCTFMGCPSTIIPFNSLIASFTSPVASKCT 497
VD+ T S++IP +S + + +S VAS T
Sbjct: 114 VDSATSAAASSSVIPTSSSVVASSSEVASSTT 145
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 300 QNLNGELVHGQAIKIEAAKSRKAPSTPTTK 389
QNL LV GQ IK K + S TTK
Sbjct: 17 QNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 121 NLKCR-APVLSKSSSGTFLIKPQKPILD 201
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,974
Number of Sequences: 5004
Number of extensions: 45473
Number of successful extensions: 253
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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