Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j24f
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 73 1e-13
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 73 2e-13
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 72 3e-13
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 69 2e-12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 69 3e-12
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 66 2e-11
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 66 2e-11
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 66 2e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 65 3e-11
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 65 4e-11
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 63 1e-10
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 63 1e-10
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 62 4e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 62 4e-10
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 60 8e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 60 8e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 60 8e-10
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 59 2e-09
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 59 3e-09
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 59 3e-09
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 58 3e-09
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 57 1e-08
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 57 1e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 54 5e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 53 2e-07
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 52 2e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 52 2e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 2e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 52 3e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 52 4e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 4e-07
At2g47310.1 68415.m05906 flowering time control protein-related ... 51 5e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 7e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 51 7e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 49 2e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 49 2e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 2e-06
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 49 3e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 49 3e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 4e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 4e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 48 5e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 6e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 6e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 1e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 46 1e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 1e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 1e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 1e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 46 2e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 46 2e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 46 2e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 46 2e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 45 3e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 3e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 45 4e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 4e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 4e-05
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 45 4e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 44 6e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 44 6e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 6e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 1e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 44 1e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 2e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 2e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 42 3e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 5e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 0.001
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.001
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.002
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 39 0.002
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 39 0.002
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.004
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 38 0.004
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 38 0.004
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.004
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.004
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.005
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.005
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.007
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.009
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 37 0.009
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.012
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 37 0.012
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.012
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.012
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.012
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 36 0.015
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 36 0.015
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.020
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.020
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 36 0.020
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.020
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.020
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 36 0.027
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 36 0.027
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 36 0.027
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 36 0.027
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.027
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.027
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 36 0.027
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 0.033
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 35 0.035
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.047
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.047
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.062
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.062
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.062
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.082
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.082
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.082
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.082
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.082
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.082
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.082
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 34 0.082
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.11
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.11
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.11
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.11
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.11
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.11
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.11
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.14
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.14
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.25
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.25
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 32 0.25
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.25
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.25
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.25
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.33
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.33
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.33
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.33
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.43
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 31 0.57
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.76
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.76
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 1.0
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.0
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.3
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.3
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 30 1.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.8
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 29 1.8
At5g55820.1 68418.m06956 expressed protein 29 2.3
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 2.3
At2g38620.1 68415.m04744 cell divsion control protein, putative ... 29 2.3
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.1
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.1
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.1
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 29 3.1
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 29 3.1
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 4.1
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 5.4
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 7.1
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 7.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 7.1
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 27 7.1
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 7.1
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 7.1
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote... 27 9.4
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.4
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 27 9.4
At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 9.4
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 299
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 300 QNLNGELVHGQAI---KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV- 467
Q LN +V + I K R P T +++ NL +RE F +FG +V
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 468 ------ECDIVRNYGFVHLDATGDVNDAIKELNG 551
E + R Y FV+ D D A + +NG
Sbjct: 230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 57.6 bits (133), Expect = 6e-09
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 299
T +++G+L TE L F ++ ++ + ++ YG+ + + Q AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 300 QNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 476
+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 477 IV-------RNYGFVHLDATGDVNDAIKELNGMMV 560
+ R YGFV + + AI+ LN +V
Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIV 177
Score = 44.0 bits (99), Expect = 8e-05
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NL +E LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 312 GELVHGQAIKIEAAKSRKAPS-----------------TPTTKIFVGNLTDKTRAPEVRE 440
G + + + A+ + + I+V N+ E+R+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 441 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
F + GT+ ++ + +GFV + DA+K +G M G+P+ V ++
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
I++ N++ TE +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 312 GELVHGQAIKIEAAKSRK 365
G++ HG+ + + A+ ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +3
Query: 321 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---- 488
VH A+ A S + S T ++VG+L + + F +F ++ + ++
Sbjct: 4 VHA-ALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSG 62
Query: 489 ----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
YG+ + + D N AI++ N +++G+ ++V S
Sbjct: 63 RSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWS 100
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 72.5 bits (170), Expect = 2e-13
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 312 G------ELVHGQAIK-----IEAAKSRKAPSTPT------TKIFVGNLTDKTRAPEVRE 440
G E G+A K +E ++ + S+ ++V NL D ++RE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 441 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
LF +FGT+ C ++R+ GFV A + + + E+NG MV G+P+ V L+
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Frame = +3
Query: 93 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 251
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 252 YGFVHMENEQVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDK 416
YGFV + E + AI+ LNG++++ + I + + + A T ++V NL++
Sbjct: 176 YGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEA 235
Query: 417 TRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 563
T E++ F ++G++ ++R+ +GFV+ + D A++ LNG D
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+++G+L T++ L F + VV + R+ YG+V+ N +A+Q L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 309 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 482
N ++G+ I+I +++ A + +FV NL + E F GT+V C +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 483 ------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
R YGFV D +AI++LNG +++ + + V
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NL D T+ LR LF ++GT+ C ++R+ GFV + +N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 312 GELVHGQAIKIEAAKSRK 365
G++V G+ + + A+ ++
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 71.7 bits (168), Expect = 3e-13
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Frame = +3
Query: 90 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 248
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 249 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNL 407
YGFV E E+ + AI LNG L++ + + + E A+ P+ T ++V NL
Sbjct: 177 GYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNL 236
Query: 408 TDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGM 554
+ E+R+ F KFG + ++R+ +GFV+ + T A++++NG+
Sbjct: 237 PKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292
Score = 57.2 bits (132), Expect = 8e-09
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
++ G+L K TEA L LF+ VV + R+ Y +++ N A++ LN
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
+ + I+I S + PST + IF+ NL + E F FGT++ C +
Sbjct: 111 YTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 483 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ YGFV + AI +LNGM+++ + + V
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NL + E +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 312 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 440
G L G+A K E + + + +++ NL D +++E
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 441 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+F ++G V ++ R +GFV + A+ E+NG M+ +P+ + L+
Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NL D + L+ +F +YG V ++ R +GFV N + A+ +N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 312 GELVHGQAIKIEAAKSRK 365
G+++ + + I A+ ++
Sbjct: 394 GKMIGRKPLYIALAQRKE 411
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 69.3 bits (162), Expect = 2e-12
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL--VH 326
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 327 GQAIKIEAAKSR--------KAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 473
+ + +E AK KAPS PT +FV N +T+ ++ + F+ +G V
Sbjct: 64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123
Query: 474 DIVRNYGFVHLDATGDVNDAIK 539
I RN+ FV + D A++
Sbjct: 124 RIRRNFSFVQFETQEDATKALE 145
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 548
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI++L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 144 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 320
T +F+ N +T E D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 321 VHGQAIKIEAA 353
+ + + +E A
Sbjct: 152 ILDRVVSVEYA 162
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 68.5 bits (160), Expect = 3e-12
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 23/170 (13%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+GNL+ L LFE+ GTV +++ R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 306 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
N ++G+ + + A R +AP P +++VGNL + +LF + G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 465 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
VE +V R +GFV + ++N+AI L+G ++G+ ++V ++
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
F++++GNL L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 303 NLNGELVHGQAIKIEAAKSR 362
L+G+ + G+AI++ A+ R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 65.7 bits (153), Expect = 2e-11
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 326
+F GN E DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 327 GQAIKIEAAK------------SRKAPST--PTTKIFVGNL-TDKTRAPEVRELFQKFGT 461
G+ +++E K SR++ S+ P+ +FV N D TR ++ + F+ +G
Sbjct: 64 GRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGK 123
Query: 462 VVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
+V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 IVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVE 164
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 329
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 158
Query: 330 QAIKIEAA 353
+ I +E A
Sbjct: 159 KVISVEYA 166
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 65.7 bits (153), Expect = 2e-11
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 320
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 321 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 482
+ GQ +K+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQK 184
Query: 483 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 578
R +GFV D AI E+NG V + ++
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 378 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 539
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 540 ELNGMMVDGQPMKV 581
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 317
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 65.7 bits (153), Expect = 2e-11
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 296
+G IFI NL L F +G ++ C + + YGFV + ++ + A
Sbjct: 130 SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGA 189
Query: 297 IQNLNGELVHGQAIKIE--AAKSRKAPS---TPTTKIFVGNLTDKTRAPEVRELFQKFGT 461
I LNG L++ + + + K ++ PS T ++V NL++ E+ ++F +FG
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 249
Query: 462 VVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 563
C I+R+ +GFV+ + + D A+ LNG D
Sbjct: 250 TTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFD 290
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 296
GT +++G+L T++ L F + G VV + R+ YG+V+ Q A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 297 IQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 473
+ LN ++G+AI++ + + + IF+ NL + E F FG ++ C
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 474 DIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ + YGFV D AI +LNGM+++ + + V
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 62.5 bits (145), Expect = 2e-10
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 312 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 440
G E G+A K E + A + + ++V NL + ++RE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 441 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
F FGT+ C ++R+ GFV + AI E+NG M+ +P+ V L+
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +3
Query: 348 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 503
AA + A TT ++VG+L ++ E F + G VV + R+ YG+V+
Sbjct: 33 AAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVN 92
Query: 504 LDATGDVNDAIKELNGMMVDGQPMKVQLS 590
D + A+ ELN M ++G+ ++V S
Sbjct: 93 YATPQDASRALNELNFMALNGRAIRVMYS 121
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NL + T+ LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 312 GELVHGQAIKIEAAKSRK 365
G+++ + + + A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 65.3 bits (152), Expect = 3e-11
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+GNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 306 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
N V+G+ + + A R + P +I+VGNL + + LF + G V
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 465 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
V+ +V R +GFV + +VN AI L+G ++G+ +KV ++
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 51.2 bits (117), Expect = 5e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
F+I++GNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 303 NLNGELVHGQAIKIEAAKSR 362
L+G+ + G+AIK+ A+ R
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 64.9 bits (151), Expect = 4e-11
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NL + T+ADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTTK-------------------IFVGNLTDKTRAPEV 434
G +V + + + A+ RK T K ++V NL D ++
Sbjct: 181 GVVVDEKELHVGRAQ-RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 435 RELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
ELF +FGT+ C ++ + GFV + + + A+ ++NG MV +P+ V L+
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Score = 64.5 bits (150), Expect = 5e-11
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Frame = +3
Query: 96 LFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------Y 254
+ F +P ++M G G +F+ NL + L +F +G V+ C + R+ Y
Sbjct: 16 IMFSERDPSNRMSGRGN--VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGY 73
Query: 255 GFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKA--PSTPTTKIFVGNLTDKTRAP 428
GFV ++ A NG L+ Q I + SR S T ++V NL +
Sbjct: 74 GFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDA 133
Query: 429 EVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+++ LF +FG + ++ R +GFV+ + AI+++NG++VD + + V
Sbjct: 134 DLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NL D L LF ++GT+ C ++ + GFV + +A+ +N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 312 GELVHGQAIKIEAAKSRK 365
G++V + I + A+ ++
Sbjct: 285 GKMVGNKPIYVSLAQCKE 302
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 63.3 bits (147), Expect = 1e-10
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 326
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 327 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 464
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 465 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVE 163
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 329
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 330 QAIKIEAA 353
+ I +E A
Sbjct: 158 KVISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 63.3 bits (147), Expect = 1e-10
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 326
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 327 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 464
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 465 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVE 163
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 329
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 330 QAIKIEAA 353
+ I +E A
Sbjct: 158 KVISVEYA 165
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 61.7 bits (143), Expect = 4e-10
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 320
+++GN+ + TE L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 321 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 482
+ GQ IK+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQK 180
Query: 483 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 578
R +GFV D AI E+NG + + ++
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 369 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAI 536
PST ++VGN+ + P ++E+F G V ++R +YGFVH AI
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAI 113
Query: 537 KELNGMMVDGQPMKV 581
LNG + GQP+KV
Sbjct: 114 LSLNGRHLFGQPIKV 128
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 61.7 bits (143), Expect = 4e-10
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Frame = +3
Query: 90 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 248
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 249 NYGFVHMENEQVGREAIQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNL 407
YGFV E E+ + AI LNG L++ + + + + A+S T ++V NL
Sbjct: 173 GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNL 232
Query: 408 TDKTRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGM 554
+ E+++ F K+G + ++ R++GFV+ + A++++NG+
Sbjct: 233 PKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 288
Score = 55.2 bits (127), Expect = 3e-08
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++G+L E+ L LF + V + R+ Y +V+ N + A+++LN
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVEC--- 473
+ + I+I S + PST + +F+ NL + E F FGT++ C
Sbjct: 107 YAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164
Query: 474 -DIV---RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
D+V + YGFV + AI +LNGM+++ + + V
Sbjct: 165 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 54.4 bits (125), Expect = 5e-08
Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NL + T+ +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 312 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 440
G L G+A K E + + + +++ NL D +++E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 441 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+F ++G V C ++ N +GFV + A+KE+NG M+ +P+ V L+
Sbjct: 347 MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NL D + L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 428
G+++ + + + A+ ++ +F + T +P
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP 428
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +3
Query: 333 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------Y 491
A+ AA + + P + ++VG+L + +LF + V + R+ Y
Sbjct: 28 AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 492 GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+V+ D + A++ LN + +P+++ LS
Sbjct: 88 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLS 120
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 60.5 bits (140), Expect = 8e-10
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 308
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 309 NGELVHGQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFG 458
G+ +K++ AK++K PS PT +FV NL + RA ++E F G
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTG 214
Query: 459 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
VV +++ YGFV A+ E G G+P+++ S
Sbjct: 215 NVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKS 266
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYG--FVHLDATGDVNDAIKE 542
T++ N+ + ++R LF+K+G+V++ ++ RN G F+ + + + A+K
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 543 LNGMMVDGQPMKV 581
L +G+ +KV
Sbjct: 154 LESCEYEGRRLKV 166
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 60.5 bits (140), Expect = 8e-10
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 290
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 291 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 461
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 462 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 587
VVE ++R+ +GFV D+ V++ + + G M+D +V++
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVEI 182
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 299
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 300 QNLNGELVHGQAIKIEAAKSRKA 368
N + ++I+ A+ +K+
Sbjct: 168 SKGNMIDMADTQVEIKKAEPKKS 190
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 60.5 bits (140), Expect = 8e-10
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 290
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 291 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 461
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 462 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 587
VVE ++R+ +GFV D+ V++ + + G M+D +V L
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVSL 182
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 60.1 bits (139), Expect = 1e-09
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 31/177 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 312 G------ELVHGQA-----------IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 440
G E G+A ++ E A ++ ++V NL +++E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 441 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+F FGTV ++R+ GFV + +A+ +L+G M++ +P+ V ++
Sbjct: 151 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +3
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 485
LN + V+ + A T T ++V NL + T +++ F ++G + +++
Sbjct: 3 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
Query: 486 N-------YGFVHLDATGDVNDAIKELNGMMVD 563
+ +GFV+ + D A++ LNG D
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFD 95
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.1 bits (139), Expect = 1e-09
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Frame = +3
Query: 132 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 287
P K++ GNL A L + + + +++ R + FV M N +
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 288 REAIQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQK 452
I NL+G G+A+K+ A K K P P T K+FVGNL+ + + F++
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 453 FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
G VV +V R YGFV + ++ A++ L+G ++G+ ++V L+
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+GNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 306 LNGELVHGQAIKIEAAKSRK 365
L+G + G+AI++ A+ +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 59.3 bits (137), Expect = 2e-09
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+++IGN+ T L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTT--------------KIFVGNLTDKTRAPEVREL 443
LNG V G+ IK+ + A S + K++VGNL + L
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 444 FQKFGTVVECDIVR--------NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
F + G VV + R +GFV + DV AI LN +++GQ ++V
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 527
S ++++GN+ ++ +L ++ G V + ++ R +GF + + D N
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 528 DAIKELNGMMVDGQPMKVQLS 590
+++LNG V+G+ +KV ++
Sbjct: 132 AVVEKLNGNTVEGREIKVNIT 152
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 58.8 bits (136), Expect = 3e-09
Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 31/210 (14%)
Frame = +3
Query: 54 SLFGVHIFNLCYILLFFVHSNP*SKMPGT-GTFKIFIGNLSDKTTEADLRPLFEKYGTVV 230
+L G ++ + F++ + + M G + +++ NL + T+ L LF +YGTV
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVS 229
Query: 231 ECDIVRN-------YGFVHMENEQVGREAIQNLNG------ELVHGQAIKIEAAKSR--- 362
++R+ +GFV+ N + ++A+++L G +L G+A+K + +
Sbjct: 230 SVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQ 289
Query: 363 -------KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFV 500
P+ + ++V NL++ +RE+F +G +V ++ + +GFV
Sbjct: 290 KFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFV 349
Query: 501 HLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+ A + LNG +VDG+P+ V+++
Sbjct: 350 CFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Score = 56.0 bits (129), Expect = 2e-08
Identities = 38/166 (22%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAI 299
TG +++ NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 300 QNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
L+G +V+G+ + + + ++ A + +T ++V NL + + LF ++GTV
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 465 VECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
++R+ +GFV+ + A++ L G+ + + + V
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 311
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 428
G LV G+ I + A+ ++ + F T+AP
Sbjct: 366 GFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAP 404
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 320
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 321 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE--LFQKFGTVVECDIV-- 482
+ GQ +K+ A ++ ++ IFVG+L +PEV + LF F C
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDL-----SPEVTDAALFDSFSAFNSCSSYYR 179
Query: 483 -------------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 578
R +GFV D AI E+NG V + ++
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 378 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 539
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 540 ELNGMMVDGQPMKV 581
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 317
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 320
+++GN+ + TE L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 321 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 482
+ GQ IK+ A ++ ++ IFVG+L+ + + F + T + ++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQK 175
Query: 483 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 578
R +GFV D AI E+ G + + ++
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIR 211
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 369 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAI 536
PST ++VGN+ + P ++E+F G V C ++R +YGFVH AI
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAI 108
Query: 537 KELNGMMVDGQPMKV 581
LNG + GQP+KV
Sbjct: 109 LSLNGRHLFGQPIKV 123
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+G L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 306 LNGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 476
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E
Sbjct: 102 -DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQ 160
Query: 477 IVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
I+R+ +GFV ++ V+ + + N + + G ++++
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIK 204
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL-NGELVHG 329
+++GN T +DL LF K+G V D+ Y FV+ E+E+ +AI+ N +G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 330 -QAIKIEAAK----------SRKAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVV 467
+ + +E AK KA S PT +FV N +TR ++ F+ +G V+
Sbjct: 64 RRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVL 123
Query: 468 ECDIVRNYGFVHLDATGDVNDAIKEL-NGMMVD 563
+ RN+ FV D A+ N ++D
Sbjct: 124 NVRMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 144 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 320
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 321 VHGQAIKIEAA 353
+ + + +E A
Sbjct: 154 LLDKVVSVEYA 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +3
Query: 111 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVH 266
S+P S G T K+++ LS +TTE LR FE++G ++ ++V + + F+
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 267 MENEQVGREAIQNLNGELVHGQAIKIEAAKSR 362
E E+ +AIQ ++G+ + G+ I +E AK+R
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/103 (20%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Frame = +3
Query: 300 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 479
+++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++ ++
Sbjct: 49 RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108
Query: 480 V--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 584
V + + F+ + + AI+ ++G +DG+ + V+
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVE 151
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 563
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 564 GQPMKVQLS 590
G + V+ S
Sbjct: 71 GSRITVEFS 79
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 320
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 321 VHGQAIKIEAAKSRKAP 371
G I +E SR AP
Sbjct: 69 FDGSRITVEF--SRGAP 83
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 52.4 bits (120), Expect = 2e-07
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 293
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 294 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 461
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 462 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG 551
V + ++R+ GFV + AI LNG
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 293
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 294 AIQNLNG 314
AI LNG
Sbjct: 267 AIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 52.4 bits (120), Expect = 2e-07
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 293
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 294 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 461
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 462 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG 551
V + ++R+ GFV + AI LNG
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGRE 293
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV +++
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 294 AIQNLNG 314
AI LNG
Sbjct: 267 AIDGLNG 273
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 320
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 321 VHGQAIKIEAAKSRKAP 371
G I +EA SR AP
Sbjct: 69 FDGSRITVEA--SRGAP 83
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 563
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 564 GQPMKVQLS 590
G + V+ S
Sbjct: 71 GSRITVEAS 79
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 303 NLNGELVHGQAIKIEAAKSR 362
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 543 LNGMMVDGQPMKV 581
+NG +DG+ + V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 303 NLNGELVHGQAIKIEAAKSR 362
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 543 LNGMMVDGQPMKV 581
+NG +DG+ + V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 303 NLNGELVHGQAIKIEAAKSR 362
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 543 LNGMMVDGQPMKV 581
+NG +DG+ + V
Sbjct: 67 MNGKELDGRVITV 79
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 51.6 bits (118), Expect = 4e-07
Identities = 40/179 (22%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 306 LNGELVHGQAIKI-----------EAAKSR-----KAPSTPTTKIFVGNLTDKTRAPEVR 437
N + G+ +K+ E +++ ++ K++ GNL + ++
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 438 ELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+ F V+ ++ R +GF+ ++ +V A+ +NG+ V+G+ +++ L+
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +3
Query: 339 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 494
++E K S +++VGNL + E+ ++F + GTVV+ IV R +G
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 495 FVHLDATGDVNDAIKELNGMMVDGQPMKV 581
FV + + + +A++ N + G+ +KV
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
+NG V G+A+++ A R+ P+ + G
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEG 311
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +3
Query: 123 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 278
S+ P T K+FI LS T+E LR FE +G +VE I+ + Y F+ E
Sbjct: 274 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 333
Query: 279 QVGREAIQNLNGELVHGQAIKIEAAKSR 362
+ A++ +NG++++G I ++ AK++
Sbjct: 334 EAAGTALKEMNGKIINGWMIVVDVAKTK 361
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Frame = +3
Query: 363 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGD- 521
++P T K+F+ L+ T +R F+ FG +VE I+ R+ G+ L+ T +
Sbjct: 275 ESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEE 334
Query: 522 -VNDAIKELNGMMVDGQPMKVQLS 590
A+KE+NG +++G + V ++
Sbjct: 335 AAGTALKEMNGKIINGWMIVVDVA 358
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 51.6 bits (118), Expect = 4e-07
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+L+ ++A L F EKY +V +V + YGFV +E +A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 306 LNGELVHGQAIKIEAAKSRKA----------PS---------TPTTKIFVGNLTDKTRAP 428
+NG +A++I A RK PS T T IFVG L
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 429 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
Score = 41.9 bits (94), Expect = 3e-04
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 26/169 (15%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 302
I++G+L + EA L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 303 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 458
NG + Q ++ A + R + P IFVG+L + E F +K+
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 459 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+V +V + YGFV + A+ E+NG+ + M++
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 51.2 bits (117), Expect = 5e-07
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+++ +S TE D+R +FEKYG V E + ++ Y F+ + + G AI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 306 LN------GELVHGQAIKIEAAKSR------KAPSTPTTKIFVGNLTDKTRAPEVRELFQ 449
L GE++ + EA + R + P P K++V L +T EV E+F
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP--KLYVRCLNKQTTKMEVNEVFS 228
Query: 450 KFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMMV---DGQPMKVQLS 590
++G + + I R Y FV AIK LNG+ QP+ V+ +
Sbjct: 229 RYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFA 285
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 306 LNGELVHGQAIKIEAAKSR 362
L+G +HG+ +K+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
++K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 537 KELNGMMVDGQPMKV 581
+ L+G + G+ +KV
Sbjct: 99 QALDGRDLHGRVVKV 113
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 50.8 bits (116), Expect = 7e-07
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 308
+++G L + +E L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-- 482
N +HG+ I++ A K +F+GNL + + F FG + +
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 483 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
R +GF+ D+ + AI+ + G + + + V
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITV 186
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +3
Query: 168 LSDKTTEADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAI 338
LS TT+ LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 339 KIEAAKSRKAPST 377
+E AK +AP+T
Sbjct: 138 FVETAKEVEAPTT 150
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 405 LTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPM 575
L+ T +R+LF F ++ + + +GF+ ++ D A+K LNG +V+G+ +
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 576 KVQ 584
V+
Sbjct: 138 FVE 140
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 50.0 bits (114), Expect = 1e-06
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVE--------CDIVRNYGF---VHMENE--QVGR 290
++FIGN+ TE + R + E G VE + RN GF ++ N R
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 291 EAIQNLNGELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKF 455
+ + + N +L G A + A + +P + ++V N+ + T +++ELFQ+
Sbjct: 257 QKMIDSNFKL-EGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 456 GTVVECDIV------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
G V + R++GFVH A+K+ V+GQP++V L+
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLA 366
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Frame = +3
Query: 129 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 284
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 285 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
++AI+ L+ + G+ I+ ++++ ++F+GN+ E R++ + G
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSETK-------NRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 465 VE 470
VE
Sbjct: 223 VE 224
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 314
+++ N+ + T+ L+ LF+++G V + R++GFVH +A+++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 315 ELVHGQAIKIEAAK 356
V+GQ +++ AK
Sbjct: 354 YEVNGQPLEVVLAK 367
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.0 bits (114), Expect = 1e-06
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 308
K+F+ NL + D+ LF + GTV +I+R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 309 NGELVHGQAIKIEAAKSRK-------------APSTPTTKIFVGNLTDKTRAPEVRELFQ 449
+ V G+ I + A+ K AP K++V NL K R+ +RELF
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 450 KFG-TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
V +V YGFV + +AI +LNG + G+P+ ++ S
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
Score = 33.1 bits (72), Expect = 0.14
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +3
Query: 123 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV--------RNYGFVHMEN 275
S PG K+++ NL+ K LR LF V +V YGFV
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 276 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 413
+ AI LNG+ + G+ I ++ + + S + N ++
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 536
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 537 KELNGMMVDGQPMKVQLS 590
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 318 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 536
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 537 KELNGMMVDGQPMKVQLS 590
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 318 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 536
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 537 KELNGMMVDGQPMKVQLS 590
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 318 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+FIG LS TTE L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 306 LNGELVHGQAIKIEAAKSRKA 368
NG+ ++G+ I ++ AK++++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 539
+K+F+G L+ T + E F K G VVE IV + +GFV + + A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 540 ELNGMMVDGQPMKV 581
E NG ++G+ + V
Sbjct: 94 EFNGQQLNGRTIFV 107
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 49.2 bits (112), Expect = 2e-06
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 299
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 300 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 440
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 441 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 563
F++FGT + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +3
Query: 132 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 287
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 288 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 383
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 49.2 bits (112), Expect = 2e-06
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 299
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 300 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 440
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 441 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 563
F++FGT + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +3
Query: 132 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 287
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 288 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 383
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 291 EAIQNLNGELVHGQAIKIEAAKSR 362
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 543 LNGMMVDGQPMKV 581
+NG +DG+ + V
Sbjct: 69 MNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 291 EAIQNLNGELVHGQAIKIEAAKSR 362
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 543 LNGMMVDGQPMKV 581
+NG +DG+ + V
Sbjct: 69 MNGQDLDGRSITV 81
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 299
G ++++GNL +E DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 300 QNLNGEL-VHGQAIKIEAAKSR-KAPSTPTTKIFVGNLTD 413
NLNG+L + G+AIK+ A + + P T+ G+L D
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT-TGDLDD 380
Score = 34.7 bits (76), Expect = 0.047
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+F ++ + TE D+ F + G V + I+ R G+V + AI L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPTT-----------------KIFVGNLTDKTRAPEVR 437
+G+ + GQ + ++ +++ K TT +++VGNL ++R
Sbjct: 243 SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLR 302
Query: 438 ELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMM-VDGQPMKV 581
++F+ FG+V E + + +GFV D +A+ LNG + + G+ +KV
Sbjct: 303 KVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKV 357
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 536
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 537 KELNGMMVDGQPMKVQLS 590
+G DG ++V+L+
Sbjct: 63 YGRDGYDFDGHHLRVELA 80
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 318 LVHGQAIKIEAAKSRKAPS 374
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 536
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 537 KELNGMMVDGQPMKVQLS 590
+G DG ++V+L+
Sbjct: 63 YGRDGYDFDGHHLRVELA 80
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 318 LVHGQAIKIEAAKSRKAPS 374
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 299
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 300 QNLNGELVHGQAIKIEAAK 356
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 536
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 537 KELNGMMVDGQPMKVQLS 590
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 299
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 300 QNLNGELVHGQAIKIEAAK 356
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 536
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 537 KELNGMMVDGQPMKVQLS 590
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 48.4 bits (110), Expect = 4e-06
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
++++ N+ A L +F+ +GTV+ ++ RN G+V M + + AI +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 306 LNGELVHGQAIKIEAAK-----SRKAP----STPTT--------KIFVGNLTDKTRAPEV 434
L+G V G+ +++ + +R+ P STP K++VGNL T+ +
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 435 RELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKELNGMMVDGQPMKVQ 584
R F KFGT+V ++ RN F L T G+ DA NG +G+ + V+
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 5e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 306 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 434
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 435 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 563
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 278
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 279 QVGREAIQNLNGELV 323
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 5e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 306 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 434
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 435 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 563
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 278
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 279 QVGREAIQNLNGELV 323
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 48.0 bits (109), Expect = 5e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 306 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 434
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 435 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 563
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 278
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 279 QVGREAIQNLNGELV 323
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 48.0 bits (109), Expect = 5e-06
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+L+ + T+ L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 306 LNGELVHGQAIKIEAAKSRKA-PSTPT-----------------TKIFVGNLTDKTRAPE 431
+NG+ + ++I A ++ A P P T IFVG L E
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 432 VRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
++ +F +FG ++ I + GFV A+ LNG + GQ +++
Sbjct: 276 LKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Score = 42.3 bits (95), Expect = 2e-04
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Frame = +3
Query: 123 SKMPGTGTF--KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 272
S+ PG+ + ++IG+L E + +F + G ++RN YGF+
Sbjct: 50 SQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFV 109
Query: 273 NEQVGREAIQNLNGELVHG--QAIKIE-----AAKSRKAPSTPTTKIFVGNLTDKTRAPE 431
+ V +Q NG + Q ++ A + R P IFVG+L +
Sbjct: 110 SHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYM 169
Query: 432 VRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ + F+ +G+V +V + YGFV + A+ E+NG +PM++
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 326
IF+G L T+ +L+ +F ++G ++ I + GFV N+ A+ LNG +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 327 GQAIKIEAAKS 359
GQ+I++ +S
Sbjct: 322 GQSIRLSWGRS 332
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.0 bits (109), Expect = 5e-06
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 42/202 (20%)
Frame = +3
Query: 102 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 257
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 258 FVHMENEQVGREAIQNLNGELVHGQAI---------KIEAAKSRKAPST----------- 377
FV M + A Q NG + G+ + K E SR S+
Sbjct: 136 FVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 378 ------PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 515
+++VGNL+ + LF + G VVE ++ + +GFV D++
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSS 255
Query: 516 GDVNDAIKELNGMMVDGQPMKV 581
+V +AIK L+G +DG+ ++V
Sbjct: 256 QEVQNAIKSLDGADLDGRQIRV 277
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q +
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 291 EAIQNLNGELVHGQAIKIEAAKSR 362
AI++L+G + G+ I++ A++R
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEAR 283
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.0 bits (109), Expect = 5e-06
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 306 LNGELVHGQAIKIEAAKSRKA----------PSTPTTK---------IFVGNLTDKTRAP 428
+NG +A++I A RK P+ T+ IFVG L
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 429 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Score = 39.1 bits (87), Expect = 0.002
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 302
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 303 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 458
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 459 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+V +V + YGFV + A+ E+NG+ + M++
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 303 NLNGELVHGQAIKIEAAK 356
+NG + G+ I ++ A+
Sbjct: 67 AMNGMDLDGRTITVDKAQ 84
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 533
P + F+G L T +R+ F+K+G +VE +V R +GF+ D +++A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 534 IKELNGMMVDGQPMKV 581
I +NGM +DG+ + V
Sbjct: 65 IAAMNGMDLDGRTITV 80
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 326
IF+G L TE DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 327 GQAIKIEAAKS 359
+++ +S
Sbjct: 389 KNTVRLSWGRS 399
Score = 38.3 bits (85), Expect = 0.004
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+++G+L E L F V ++RN YGFV + EA+Q+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 309 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 464
+G + Q ++ A + R + + P IFVG+L + E F ++ +V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 465 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+V + YGFV + + A+ E+NG + M+V ++
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
Score = 30.3 bits (65), Expect = 1.0
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 37/173 (21%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+L+ ++A L F +Y +V +V + YGFV +E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 306 LNGELVHGQAIKIEAAKSRKAPS--------------------------TPTTKIFVGNL 407
+NG + +++ A ++A + + + IFVG L
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 408 TDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMV 560
++ + F FG VV I + GFV +AI LNG ++
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVI 387
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 46.8 bits (106), Expect = 1e-05
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 35/173 (20%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 306 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 440
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 441 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD 563
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +3
Query: 132 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 284
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 285 GREAIQNLNGELVHGQAIKIEAA 353
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 46.8 bits (106), Expect = 1e-05
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 35/173 (20%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 306 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 440
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 441 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD 563
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVE 177
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +3
Query: 132 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 284
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 285 GREAIQNLNGELVHGQAIKIEAA 353
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+F+ NLS +T +D+ F G VV ++ N YGFV + ++A++N N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 312 GELVHGQAIKIEAAKSRKAPSTP 380
GE +H I I+ AK+ P P
Sbjct: 306 GEYLHDHKIFIDVAKTAPYPPGP 328
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIKELN 548
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A+++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 549 GMMVD 563
G +D
Sbjct: 189 GECLD 193
Score = 35.5 bits (78), Expect = 0.027
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 311
+F+ NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 312 GELVHGQAIKIEAAKSRKAPSTP 380
GE + I ++ A ++KA P
Sbjct: 189 GECLDNNKIFLDVA-NKKATYLP 210
Score = 33.9 bits (74), Expect = 0.082
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 311
+F+ NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 312 GELVHGQAIKIEAAKSRKAPSTP 380
GE + + I ++ + P P
Sbjct: 551 GENLRSREIFLDVVELAPYPLRP 573
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 306 LNGELVHGQAIKIEAAKSR 362
L+G+ +HG+ I++ A R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
++KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 537 KELNGMMVDGQPMKV 581
+L+G + G+ ++V
Sbjct: 93 -QLDGQDLHGRRIRV 106
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 396 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 551
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 552 MMVDGQPMKVQLS 590
D ++V+ S
Sbjct: 238 YGYDNLILRVEWS 250
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +3
Query: 159 IGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 314
+ NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 315 ELVHGQAIKIE 347
+++E
Sbjct: 238 YGYDNLILRVE 248
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 46.4 bits (105), Expect = 1e-05
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 40/178 (22%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+FIG +S T E L+ F KYG +VE I+R+ +GF+ + V I +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 306 ---LNGELVHGQ-AIKIEAAKSRKAPSTP----------------TTKIFVGNLTDKTRA 425
++G V + A+ + + K ++P T KIFVG L
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 426 PEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV----NDAIKELNGMMVD 563
E + F +FGT+ + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE 193
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 291 EAIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVG 401
+ EL +G+ ++++ A ++ S TP +G
Sbjct: 178 MVLHKTFHEL-NGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 537 KELNGMMVDGQPMKVQLS 590
KE++G ++G+ ++V L+
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 537 KELNGMMVDGQPMKVQLS 590
KE++G ++G+ ++V L+
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 1e-05
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Frame = +3
Query: 63 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 242
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 243 VRN--------YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAP 371
VR+ YGFV E E+ A ++ + L+ G+ I ++ + + P
Sbjct: 96 VRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +3
Query: 363 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATG 518
KA P +FVG L+ T +RE+ K+G + +VR+ YGFV +
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Query: 519 DVNDAIKELNGMMVDGQPMKV 581
++ A ++ + ++DG+ + V
Sbjct: 117 EMLRAYEDAHHSLIDGREIIV 137
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG+L E L F + G +V ++RN YGF+ + +Q
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 309 NGELVHGQAIKIEA-----AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVE 470
NG + G + +K + P IFVG+L ++E F+ + +V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 471 CDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+V + YGFV + N A+ E+NG+ +PM++
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 326
I + NL TE +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 327 GQAIKIEAAKS 359
QA++I +K+
Sbjct: 299 QQAVRISWSKN 309
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+L+ T+ L+ F Y +V +V + YGFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 306 LNGELVHGQAIKIEAAKSRK 365
+NG + ++I AA +K
Sbjct: 178 MNGLYCSTRPMRISAATPKK 197
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 500
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 501 HLDATGDVNDAIKELNGMMVDGQPMKV 581
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 291 EAIQNLNGELVHGQAIKIEAAKSR 362
+AI +LNG + G+ I++ A++R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 306 LNGELVHGQAIKIEA 350
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 543 LNGMMVDGQPMKV 581
LNG +DG+ ++V
Sbjct: 310 LNGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 500
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 501 HLDATGDVNDAIKELNGMMVDGQPMKV 581
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 291 EAIQNLNGELVHGQAIKIEAAKSR 362
+AI +LNG + G+ I++ A++R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 306 LNGELVHGQAIKIEA 350
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 543 LNGMMVDGQPMKV 581
LNG +DG+ ++V
Sbjct: 318 LNGADLDGRQIRV 330
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 308
+++G + TE DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 309 NGELVHGQAIKIE 347
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 46.0 bits (104), Expect = 2e-05
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+ + NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 312 GELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 476
GE +H KI K ++P + T +FV NL D + ++ F+ G VV
Sbjct: 220 GEYLHNH--KILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVR 277
Query: 477 IVRN-------YGFVHLDATGDVNDAI 536
++ N +GFV + + A+
Sbjct: 278 LIVNSQGKHAGWGFVEFASANEAEKAL 304
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 554
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 555 MVDGQPMKVQLS 590
+DG ++V+L+
Sbjct: 69 NLDGCRLRVELA 80
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 129 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 293
M G + I++GNL E ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 294 AIQNLNGELVHGQAIKIEAAKSRKAPST 377
AI+ +G + G +++E A + S+
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSS 88
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 536
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 537 KELNGMMVDGQPMKVQLS 590
K L+G +VDG+ + V+++
Sbjct: 66 KSLDGKIVDGRLIFVEVA 83
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 326
IF+G + TE DL+ +F ++G +V I + GFV N +A+ LNG +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 327 GQAIKIEAAKS 359
GQ+I++ +S
Sbjct: 340 GQSIRLSWGRS 350
Score = 41.9 bits (94), Expect = 3e-04
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+F+G+L+ T+ L F+ Y +V +V + YGFV +E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 306 LNGELVHGQAIKIEAAKSRK----------------APSTPT-TKIFVGNLTDKTRAPEV 434
+NG+ + ++ A ++K S PT T IFVG + ++
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 435 RELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+ +F +FG +V I + GFV A+ LNG + GQ +++
Sbjct: 295 KSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
Score = 39.5 bits (88), Expect = 0.002
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 25/177 (14%)
Frame = +3
Query: 123 SKMPGT-GTFK-IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 272
S+ PG+ G + ++IG+L E L +F G ++RN YGF+
Sbjct: 70 SQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFV 129
Query: 273 NEQVGREAIQNLNGELVHG--QAIKIEAAK----SRKAPSTPTTKIFVGNLTDKTRAPEV 434
N +Q NG + QA ++ A+ R+ P +FVG+L +
Sbjct: 130 NHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHML 189
Query: 435 RELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 578
E F+ + +V +V + YGFV + A+ E+NG +PM+
Sbjct: 190 TETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 306 LNGELVHGQAIKIEAAKSR 362
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +3
Query: 354 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 509
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 510 ATGDVNDAIKELNGMMVDGQPMKV 581
+DAIK ++G + + + V
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 306 LNGELVHGQAIKIEAAKSR 362
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +3
Query: 354 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 509
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 510 ATGDVNDAIKELNGMMVDGQPMKV 581
+DAIK ++G + + + V
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISV 85
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 554
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 555 MVDGQPMKVQLS 590
DG ++V+++
Sbjct: 69 DFDGCRLRVEIA 80
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 317
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 318 LVHGQAIKIEAA 353
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 323
+ +GN+S + +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 324 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVE 470
G + I + S++ PS T + V NL E+ L + +G V E
Sbjct: 279 RGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKE 330
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLDATG--DVNDAIKELN 548
P+ + VGN++ E++ LF++FG + +N GF+ + +A + L
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQ 274
Query: 549 GMMVDGQPMKVQLS 590
++ G + ++ S
Sbjct: 275 NKLLRGTKLDIRYS 288
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.4 bits (100), Expect = 6e-05
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 311
+++G L TE +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 312 GELVHGQAIKIEAAKSRKAPSTP 380
G+ + G+A+++ +R P
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNP 91
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 548
++VG L VR +F +G+V+ IV + YGFV +DAI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 549 GMMVDGQPMKV 581
G + G+ ++V
Sbjct: 69 GKSIGGRAVRV 79
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 44.4 bits (100), Expect = 6e-05
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 302
F+IF+G+L +E DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 303 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPE-VRELFQKFG------- 458
L +++G+ + A++ +FVGN+ K PE +RE + +G
Sbjct: 274 ELKSPMINGKKCGVTASQDNDT-------LFVGNIC-KIWTPEALREKLKHYGVENMDDI 325
Query: 459 TVVE----CDIVRNYGFVHLDATGDVNDAIKEL 545
T+VE ++ R Y F+ + D DA K L
Sbjct: 326 TLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRL 358
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 159 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 332
+ NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 333 AIKIEAAKS 359
A+ +E AKS
Sbjct: 414 ALNVEIAKS 422
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 396 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD-ATGDVNDAIKELNGMMVDGQP 572
V NL+ ++R+LF GTVV+C I + +++ + + A LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALALNNTEVFGRA 414
Query: 573 MKVQLS 590
+ V+++
Sbjct: 415 LNVEIA 420
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K++IG LS T E L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTP 380
+NG+ ++G I + AK PS P
Sbjct: 92 MNGQELNGFNISVNVAKD--WPSLP 114
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 536
+TK+++G L+ T +++ F F V E ++ N YGFV+ + N AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 537 KELNGMMVDGQPMKVQLS 590
+NG ++G + V ++
Sbjct: 90 SAMNGQELNGFNISVNVA 107
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 43.6 bits (98), Expect = 1e-04
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+++G+L E L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 309 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 464
+G ++ Q +I A + R + P +FVG+L+ + E F ++ +V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 465 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+V + YGFV + + A+ E+NG + M+V ++
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 326
IF+G + + DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 327 GQAIKIEAAKS 359
+++ +S
Sbjct: 383 KNTVRLSWGRS 393
Score = 35.9 bits (79), Expect = 0.020
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 324 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGF 497
HG + ST T IFVG + ++R+ F +FG VV I + GF
Sbjct: 302 HGSNGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGF 360
Query: 498 VHLDATGDVNDAIKELNGMMV 560
V DAI+ LNG ++
Sbjct: 361 VQFADRKSAEDAIESLNGTVI 381
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+F+G+LS T+ L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 306 LNGELVHGQAIKIEAAKSRKA 368
+NG + +++ A ++A
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGRE 293
T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+ +
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 294 AIQN 305
A+QN
Sbjct: 69 ALQN 72
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 537 KELNGMMVDGQPMKV 581
E++G ++G+ ++V
Sbjct: 94 SEMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 537 KELNGMMVDGQPMKV 581
E++G ++G+ ++V
Sbjct: 94 SEMDGKELNGRHIRV 108
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 306 LNGELVHGQAIKIEAAKSR 362
++G + I + A+ +
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 539
++IFVG L+ + ++ F +FG +++C I+ R +GF+ ++++I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 540 ELNG 551
E++G
Sbjct: 67 EMHG 70
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 303 NLNG 314
+NG
Sbjct: 66 EMNG 69
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 543 LNG 551
+NG
Sbjct: 67 MNG 69
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
++++GNLS TT+ LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 306 LNGELVHGQAIKIE 347
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 309 NGELVHGQAIKIEAAKS 359
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
Score = 40.7 bits (91), Expect = 7e-04
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Frame = +3
Query: 228 VECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKS--RKAPSTPTTKIFVG 401
V+ D+ +V M+ E +E + + + H A+ +E+ P +FV
Sbjct: 189 VKDDVRLEDDWVPMDEELGAQELEEVIREKAAHSSAVVLESIGDIPEAEVKPPDNVLFVC 248
Query: 402 NLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMM 557
L T ++ +F +FGTVV D++R+ Y F+ + A +++ +
Sbjct: 249 KLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNAL 308
Query: 558 VDGQPMKVQLS 590
+D + + V S
Sbjct: 309 IDDRRIHVDFS 319
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Frame = +3
Query: 159 IGNLSDKTTEADLRPLFEKY---GTVVECDIVRN----------YGFVHMENEQVGREAI 299
+ NLS KTT+ L+ F K G ++ I+++ YGFV ++ +
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 300 QNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQKF 455
++L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF F
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPF 692
Query: 456 GTV 464
G +
Sbjct: 693 GQI 695
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 314
+++ ++ + TE L LF +G VV+C I V + F+ +E VG NL+G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDE-VGARTALNLSG 210
Query: 315 ELVHGQAIKIEAAKSRKAPSTPT 383
++ +K+ +K+ AP PT
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPT 233
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 326
+F+G L T+ L+ +F +YG +V I + GFV + EA++ LNG +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 327 GQAIKIEAAKS 359
G +++ +S
Sbjct: 323 GTTVRLSWGRS 333
Score = 39.9 bits (89), Expect = 0.001
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 299
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 300 QNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIFVGNLTDKTRA 425
+NG + ++I A S+K A T T +FVG L
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 426 PEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
++ +F ++G +V I + GFV +A++ LNG+ + G +++
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
Score = 35.5 bits (78), Expect = 0.027
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 309 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 455
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 456 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
G V D V + YGFV + A+ E+NG+ +PM++
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 311
+++G+L+ +TTE+DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 312 G 314
G
Sbjct: 80 G 80
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGM 554
+ ++VG+LT +T ++ ELF ++G + + R + F++ + A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 555 MVDG 566
++G
Sbjct: 77 NLNG 80
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +3
Query: 246 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 419
RN+ V + + R+ + L G L + IKI + P T + G +T
Sbjct: 399 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRT 456
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+F+ +S +TE L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPTTK 389
N +LV G+ + ++ K+ K + P TK
Sbjct: 83 NAQLVDGRVVILDTTKAAK-HNPPDTK 108
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
++ +FV ++ + + + F ++G V++ D++ + + +V + + A+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 537 KELNGMMVDGQ 569
ELN +VDG+
Sbjct: 80 LELNAQLVDGR 90
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +3
Query: 396 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNG 551
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 552 MMVDGQPMKVQ 584
D ++V+
Sbjct: 277 YGYDNLILRVE 287
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 159 IGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 314
+ NLS+ T E DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 315 ELVHGQAIKIEAAKSR 362
+++E A R
Sbjct: 277 YGYDNLILRVEWATPR 292
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 40.7 bits (91), Expect = 7e-04
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Frame = +3
Query: 108 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 263
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 264 HMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST------PTTKIFVGNLTDKTRA 425
+ V + ++ ++ + + ++ R T T KIFVG L
Sbjct: 113 TFADSAVAEKVLE--EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEE 170
Query: 426 PEVRELFQKFGTVVECDIVRNY 491
E++ F +G ++E I+ ++
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDH 192
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 278
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 342 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Frame = +3
Query: 354 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 503
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 504 LDATGDVNDAIKELNGMMVDGQ 569
++ D A++ +NG DG+
Sbjct: 125 FNSKEDAQSAVEAMNGKFFDGR 146
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 309 NGELVHGQAIKIE 347
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTT 386
+N + +A A + P PT+
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTS 109
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
T TKIFVG L +T+ +R F++FG +VE ++ + YGFV
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 531 AIKELNGMMVDGQPMKVQLS 590
A + +N ++DG+ L+
Sbjct: 79 ACQNMN-PVIDGRRANCNLA 97
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 329
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 330 QAIKIEAA 353
+ I +E A
Sbjct: 118 KVISVEYA 125
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +3
Query: 372 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 527
++P++K+F+G L+ +++ F FG V E I R +GFV GD
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 528 DAIKELNGMMVDGQPMKVQLS 590
A ++G + G+P+++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.1 bits (87), Expect = 0.002
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 302
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 303 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 458
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 459 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
+V +V + YGFV + A+ E+NG+ + M++
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
Score = 34.7 bits (76), Expect = 0.047
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+G+LS ++ L F EKY +V +V + YGFV +E +A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 306 LNGELVHGQAIKIEAAKSRK 365
+NG +A++I A RK
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 531 AIKELNGMMVDGQ 569
A++ + +DG+
Sbjct: 93 AMQAMQNKELDGR 105
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 308
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 309 NGE 317
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.009
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 306 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 483 R 485
R
Sbjct: 139 R 139
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+ K+FVG + ++ LFQ+F V E +I+++
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 308
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 309 NGE 317
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.009
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 306 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 483 R 485
R
Sbjct: 139 R 139
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 545
+F+ N+ + E+ FQ FG V+ + + +GFV D+ +AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 546 NGMMVDGQPMKVQL 587
NG + G+ +KVQL
Sbjct: 411 NGRHLGGKKLKVQL 424
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+FI N+ + + +L F+ +G V+ + + +GFV +++ + AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 309 NGELVHGQAIKIE 347
NG + G+ +K++
Sbjct: 411 NGRHLGGKKLKVQ 423
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+ K+FVG + ++ LFQ+F V E +I+++
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Frame = +3
Query: 129 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 284
+P G+ ++++G + TE DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 285 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 464
EAI LN G+ IK +++ ++F+GN+ ++++ + G
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAKH-------RLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 465 VE 470
V+
Sbjct: 199 VQ 200
Score = 30.7 bits (66), Expect = 0.76
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
++I NL T+ L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 309 NGELVHGQAIKIEAAKSRKAPSTPTTKI 392
+ G + AK + T T +
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTV 357
Score = 27.9 bits (59), Expect = 5.4
Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 25/172 (14%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHME--NEQVGREAI 299
++F+GN+ E+D++ + G V+ ++ RN GF +E N +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSK 232
Query: 300 QNLNGEL--VHGQAIKIEAAKSRK-----APSTPTTKIFVGNLTDKTRAPEVRELFQKFG 458
Q ++ + A + A+SR + ++ +++ NL ++ LF+ G
Sbjct: 233 QKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHG 292
Query: 459 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
+++ I YGFVH V A+K +DG + L+
Sbjct: 293 KILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLA 344
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 531 AIKELNGMMVDGQ 569
A+ + N ++DG+
Sbjct: 74 AVADPN-PVIDGR 85
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 306 LNGELVHGQAIKIEAAK-SRKAPSTP 380
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 531 AIKELNGMMVDGQ 569
A+ + N ++DG+
Sbjct: 74 AVADPN-PVIDGR 85
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 306 LNGELVHGQAIKIEAAK-SRKAPSTP 380
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 308
+F+GN+ TE LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 309 NGELVHGQAIKIEAAKSRK 365
++G+ ++++ A++ K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G + TE L LF ++ V E +I+ R F+ + + I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 306 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
N + + G + ++ + K+FVG L EV+ LF ++GT+ + I+
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL 132
Query: 483 R 485
R
Sbjct: 133 R 133
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 545
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 546 NGMMVDGQPMKVQL 587
NG + G+ +KVQL
Sbjct: 392 NGCQLSGKKLKVQL 405
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 308
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 309 NG 314
NG
Sbjct: 161 NG 162
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 326 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 385
Query: 291 EAIQNLNGELVHGQAIKIE 347
AI +NG + G+ +K++
Sbjct: 386 NAINTMNGCQLSGKKLKVQ 404
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +3
Query: 132 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 284
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 285 GREAIQNLNGELVHGQAIKIEAA 353
+ +Q EL +G+ ++++ A
Sbjct: 87 VDKVLQKTFHEL-NGKMVEVKLA 108
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 539
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 540 ---ELNGMMVD 563
ELNG MV+
Sbjct: 94 TFHELNGKMVE 104
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 551
P+ ++VGNL E+ + F +FG + R+Y FV+ + D AI+ L G
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 552 MMVDGQPMKVQLS 590
+ G P++++ +
Sbjct: 81 FPLSGNPLRIEFA 93
Score = 33.9 bits (74), Expect = 0.082
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 153 IFIG-NLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV 323
++IG S K +A LR +F +G + + + R+Y FV N +A ++L G+L
Sbjct: 153 LYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLF 212
Query: 324 HGQAIKIEAAKSRKAPS 374
+ I AKS + S
Sbjct: 213 GNPRVHICFAKSEPSSS 229
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 551
++++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+E++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.5 bits (83), Expect = 0.007
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 305
K+F+G +S +T E LR F YG V + ++R+ +GFV + V +Q
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 306 LNG----------------ELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEV 434
+ + V G+ + ++S + T KIFVG L E
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 435 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 536
R+ F+ +G V + I+ R +GFV D+ V+ +
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 34.7 bits (76), Expect = 0.047
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 299
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 300 QNLNGELVHGQAIKIEAAKSRKA 368
+L G+ ++++ A + A
Sbjct: 169 HKTFHDL-SGKQVEVKRALPKDA 190
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.1 bits (82), Expect = 0.009
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +3
Query: 135 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 287
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 288 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 422
R A + ++ G+ A S P P + N+ + R
Sbjct: 79 RRACADPT-PIIDGRRANCNLA-SLGRPRPPLPYAVIPNMPGRLR 121
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
T TK+FVG L +T E+R F +FG ++E I+ + YGFV +
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Query: 531 AIKELNGMMVDGQ 569
A+ + N ++DG+
Sbjct: 74 AVADPN-PVIDGR 85
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 500
E+ + + P+T +FV L+ +T + +R F +FG V + +V + +GFV
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 501 HLDATGDVNDAIKELNGMMVDG 566
D I ++G +DG
Sbjct: 103 RYATLEDSAKGIAGMDGKFLDG 124
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 290
T +++GNLS K E L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 291 EAIQNLNGELVHGQAIKIEAAKSRKAPS 374
A + G +V+ +KI K+ PS
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKAVSLPS 265
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----------RNYGFVHLDATGDVN 527
TT ++VGNL+ K + F +FG + I+ RN GFV D
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 528 DAIKELNGMMVDGQPMKV 581
A E+ G++V +K+
Sbjct: 238 AAKDEMQGIIVYEYELKI 255
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.012
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 293
+G + I NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 294 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTT 386
A++ +N +++ G+ I I A ++RK P T
Sbjct: 104 AMKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +3
Query: 345 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFV 500
E SR S+ + + + NL R ++R+ F++FG + + + RNY GFV
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
Query: 501 HLDATGDVNDAIKELNGMMVDGQPMKV 581
D +A+K +N ++ G+ + +
Sbjct: 94 KYRYAEDAAEAMKRMNHKVIGGREIAI 120
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 302
IF+ TT+ +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 545
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 546 NGMMVDGQPMKVQL 587
NG + G+ +KVQL
Sbjct: 401 NGCQLSGKKLKVQL 414
Score = 33.9 bits (74), Expect = 0.082
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G + TE L LF ++ V E +I+ R F+ + + I +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 306 L-NGELVHGQAI---------KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 455
N + + G + ++E P K+FVG L EV+ LF ++
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 456 GTVVECDIVR 485
GT+ + I+R
Sbjct: 133 GTIKDLQILR 142
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 308
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 309 NG 314
NG
Sbjct: 170 NG 171
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 290
G +FI N+ + + +L F+ +G V+ + + +GF+ +++ +
Sbjct: 335 GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQ 394
Query: 291 EAIQNLNGELVHGQAIKIE 347
AI +NG + G+ +K++
Sbjct: 395 NAINTMNGCQLSGKKLKVQ 413
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.015
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 323
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 324 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 485
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 486 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.015
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 323
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 324 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 485
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 486 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 590
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 309 NGELVHGQAIKIEAAKSRKAPSTP 380
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 539
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 540 ELNGMMVDGQPMKVQLS 590
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 309 NGELVHGQAIKIEAAKSRKAPSTP 380
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 539
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 540 ELNGMMVDGQPMKVQLS 590
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +3
Query: 354 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 503
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 504 LDATGDVNDAIKELNG 551
++ D A++ +NG
Sbjct: 106 FNSKEDAQSAVEAMNG 121
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 309 NGEL 320
NG++
Sbjct: 120 NGKV 123
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 551
++++VGNL + E+ + F+ FG V + R Y F+ + D DAI+ L+G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 299
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVV 177
Query: 300 QNLNGELVHGQAIKIEAA 353
N + + ++++ A
Sbjct: 178 MQSNFHELSDKRVEVKRA 195
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 278
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +3
Query: 357 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 512
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 513 TGDV 524
V
Sbjct: 171 EDSV 174
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 542
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 86 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 145
Query: 543 LNGMMVDGQPMKVQL 587
N + +DG+PMK+++
Sbjct: 146 YNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 542
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 22 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 81
Query: 543 LNGMMVDGQPMKVQL 587
N + +DG+PMK+++
Sbjct: 82 YNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 542
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 88 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 147
Query: 543 LNGMMVDGQPMKVQL 587
N + +DG+PMK+++
Sbjct: 148 YNDVQLDGKPMKIEI 162
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 542
++F G+L ++ + + F +F T ++R+ YGFV D+ A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 543 LNGMMVDGQPMKVQLS 590
+NG V +P+K++ S
Sbjct: 198 MNGKYVGNRPIKLRKS 213
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 302
+++F G+L ++ + L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 303 NLNGELVHGQAIKI 344
+NG+ V + IK+
Sbjct: 197 EMNGKYVGNRPIKL 210
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
IF+ L TT +L+ FE YG + EC +V + +GFV + + R A++N
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMV 560
+ + NL + +R +FQ +G V E R FV D A++ +NG ++
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 561 DGQPMKVQLS 590
G+PM +Q S
Sbjct: 245 SGKPMVIQFS 254
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 35.5 bits (78), Expect = 0.027
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 309 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 455
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 456 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
G V D V + YGFV + A+ E+NG+ +PM++
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
Score = 28.7 bits (61), Expect = 3.1
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 29/147 (19%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAI 299
+ IF+G+L+ T+ L F Y +V +V + YGFV +E A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 300 QNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIFVGNLTDKTRA 425
+NG + ++I A S+K A T T +FVG L
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 426 PEVRELFQKFGTVVECDIV--RNYGFV 500
++ +F ++G +V I + GFV
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGKRCGFV 301
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 278
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.1 bits (67), Expect(2) = 0.033
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 153 IFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 320
+ + NL+ D E L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 321 VHGQAIKIEAAK 356
+ G+ +++ +K
Sbjct: 307 LFGKRLEVNFSK 318
Score = 23.0 bits (47), Expect(2) = 0.033
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 348 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 494
AAK+ + +PT I + L EV Q+ G VV + G
Sbjct: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNG 391
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 144 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 320
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 321 VHGQAIKIEAA 353
+ + + +E A
Sbjct: 128 LLDKVVSVEYA 138
Score = 33.5 bits (73), Expect = 0.11
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Frame = +3
Query: 252 YGFVHMENEQVGREAIQNL-NGELVHGQA-IKIEAAKS----------RKAPST--PTTK 389
Y FV+ E+E+ +AI+ N +G+ + +E AK KA S PT
Sbjct: 11 YAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKT 70
Query: 390 IFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKEL-NGMMVD 563
+FV N +TR ++ F+ +G V+ + RN+ FV D A+ N ++D
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.047
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 290
G K+++GNL +E LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 291 EAIQNLNGEL-VHGQAIKIEA 350
A LNG+L + G+ IK+ +
Sbjct: 321 AAQIALNGKLEIAGRTIKVSS 341
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +3
Query: 135 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 287
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 288 REA 296
R A
Sbjct: 79 RRA 81
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.062
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGREAIQN---L 308
I++GN+ T +++ F+ GTV I+ + GF ++E +V EA+QN L
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV--EAVQNSLIL 162
Query: 309 NGELVHGQAIKIEAAKS 359
N +HG+ IK+ A ++
Sbjct: 163 NESELHGRQIKVSAKRT 179
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.3 bits (75), Expect = 0.062
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +3
Query: 129 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 284
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 285 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 380
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 33.9 bits (74), Expect = 0.082
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.062
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +3
Query: 129 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 284
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 285 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 380
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 33.9 bits (74), Expect = 0.082
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +3
Query: 381 TTKIFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRN------YGFVHLDATGDVNDAI 536
+T +++GN++ T ++ ELF + G + + + +N + FV + D DA+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 537 KELNGMMVDGQPMKV 581
K ++G ++D +P++V
Sbjct: 93 KYISGTILDDRPIRV 107
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRN------YGFVHMENEQVGREAIQNL 308
++IGN+S TTE L LF + G + + + +N + FV + + +A++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 309 NGELVHGQAIKIE 347
+G ++ + I+++
Sbjct: 96 SGTILDDRPIRVD 108
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 548
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 548
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.9 bits (74), Expect = 0.082
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 306 LNGELVHGQAIKIEAAK---SRKAPSTP 380
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.9 bits (74), Expect = 0.082
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 306 LNGELVHGQAIKIEAAK---SRKAPSTP 380
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.9 bits (74), Expect = 0.082
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 306 LNGELVHGQAIKIEAAK---SRKAPSTP 380
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 533
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 534 IKELNGMMVDGQPMKVQ 584
I+ L+ ++ G+ + V+
Sbjct: 103 IRSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +3
Query: 378 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 533
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 534 IKELNGMMVDGQPMKVQ 584
I+ L+ ++ G+ + V+
Sbjct: 133 IRSLDHSVLQGRVITVE 149
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 512
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 293
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 294 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 470
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 293
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 294 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 470
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.11
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 308
+ + NL + DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 309 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVG---NLTDKTRAP 428
+G L+ G+ + + A ++RK P+ T+ G D+ R+P
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSP 142
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 539
T + V NL R ++R F++FG V + + R+Y GF+ D +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 540 ELNGMMVDGQPMKV 581
+++G ++ G+ + V
Sbjct: 97 QMDGYLLLGRELTV 110
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 311
+F+ NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 312 GELVHGQAI 338
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.5 bits (73), Expect = 0.11
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 306 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 413
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.5 bits (73), Expect = 0.11
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 306 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 413
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.14
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 144 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 287
T KIF+G L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 288 REAIQNLNGELV 323
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 485
K+F+G ++ T +RE F FG V++ ++R
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.1 bits (72), Expect = 0.14
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 308
+ + NL + DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 309 NGELVHGQAIKIE-AAKSRKAPSTPTTK-IFVGNLTDKTRAP 428
+G L+ G+ + + A ++RK P+ + G D+ R P
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTP 139
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 539
T + V NL R ++R+ F++FG V + + R+Y GFV D DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 540 ELNGMMVDGQPMKV 581
++G ++ G+ + V
Sbjct: 96 HMDGYLLLGRELTV 109
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 542
T++ V NL ++RELF + G V I R G + D A+K+
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 543 LNGMMVDGQPMKVQL 587
N +++DG+PM++++
Sbjct: 153 YNNVLLDGRPMRLEI 167
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 542
TK+++ NL +++ELF + G + I R+ G + GD A+K
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKR 167
Query: 543 LNGMMVDGQPMKVQL 587
N + +DG+ MK+++
Sbjct: 168 YNNVQLDGKLMKIEI 182
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +3
Query: 339 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 494
K + A P +FV L ++ +++ F+ +G + +V + Y
Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
Query: 495 FVHLDATGDVNDAIKELNGMMVDGQPMKVQL 587
F+ T D+ A K+ +G +DG+ + V +
Sbjct: 183 FIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 360 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 515
R+ + + ++FV L+ T ++++ F FG +V+ ++ + +GFV
Sbjct: 26 RRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATI 85
Query: 516 GDVNDAIKELNGMMVDG 566
D A E+N +DG
Sbjct: 86 EDAEKAKAEMNAKFLDG 102
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 545
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 546 NGMMVDGQPMK 578
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +3
Query: 390 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 545
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 546 NGMMVDGQPMK 578
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.33
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 126 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 254
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
KIF+G L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 306 LNGELVHGQAIKIEAA 353
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
KIFVG L + ++R+ F +FG + + I ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 147 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 278
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 393 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 509
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 360 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 470
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 360 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 470
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 323
+++G L+ + E D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 324 HGQAIKI 344
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.1 bits (67), Expect = 0.57
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 530
T TKI+VG L TR + F++FG ++ ++V + YGFV
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 531 AIKELN 548
A K+ N
Sbjct: 70 ACKDPN 75
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 308
++IG + E ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 309 NGELVHGQAIKI 344
N L+ +K+
Sbjct: 122 NDYLLMEHMLKV 133
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +3
Query: 336 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.7 bits (66), Expect = 0.76
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +3
Query: 306 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 485
+ G L+ + + E +K++K K+ + NL + + +++ +F G V + I +
Sbjct: 311 VKGNLIWARQLGGEGSKAQK------WKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPK 364
Query: 486 NY--------GFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
N+ FV D +AIK+ NG M +P+ V
Sbjct: 365 NFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 311
+F+GN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 312 GELVHGQAIKIEAAKSRKAPSTPTTKIFVG 401
+HG+ +K+ +K + P K F G
Sbjct: 153 ESELHGRQLKV----LQKRTNVPGLKQFRG 178
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = +3
Query: 267 MENEQVG-REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 443
ME+E RE + E+ I A ++ K +FVGN+ EV++
Sbjct: 53 MEDEAAALREMQAKVEKEMGAQDPASIAANQAGKE-EVDARSVFVGNVDYACTPEEVQQH 111
Query: 444 FQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 581
FQ GTV I+ + + +V V +A+ +LN + G+ +KV
Sbjct: 112 FQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEAL-QLNESELHGRQLKV 163
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 323
+++G L+ + E D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 324 HGQAIKI 344
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 252 YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDK 416
YGFV + + A++ NGE +H I + AK+ AP P K NL +K
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT--APYPPRIKY---NLAEK 773
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 299
KIF+ L T L F++YG + +C V + YGF+ ++ R A+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 300 --QNLNGELVHGQAIKIEAAKSRKA--------PSTPTTKIFVGNLTDKTRAPEVRELFQ 449
+ + + Q I + P KI+V N++ ++ E F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 450 KFGTVVE 470
+FG + E
Sbjct: 249 RFGEIEE 255
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 542
+ FVG L T + F +FG V + I+ + + FV + AI
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 543 LNGMMVDGQPMKVQ 584
+NG +DG+ + Q
Sbjct: 105 MNGQELDGRNITAQ 118
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 299
G +++IGNL+ TTE D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 300 QNLNGELVHGQAIKIEAA-KSRKA 368
L+ +++ G+ +KI A K R A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPA 342
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 320
+ + +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 321 VHGQAIKIEAA 353
G+ ++++ A
Sbjct: 90 FLGKVLQVQRA 100
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 258 FVHMENEQVGREAIQNLNGELVHG-QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 434
F H EN++ RE ++N N + G Q IKI + + + D A V
Sbjct: 335 FKHDENDEECREEVENSNSQGKRGDQCIKISVPTESFTLHHEVDSVSISSSGD-AYASIV 393
Query: 435 RELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKE 542
E + G V + DI+++ + +A+G V++ + +
Sbjct: 394 PECLLESGHVNDIDILQSIETID-EASGKVDEQVDD 428
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +3
Query: 276 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDKTRAPE 431
E V + I + G +V G A+ + +K++ + + T TK+ V N+ + E
Sbjct: 307 ELVKQGKILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKE 366
Query: 432 VRELFQKFGTV 464
VR+LF FG +
Sbjct: 367 VRQLFTPFGQI 377
>At2g38620.1 68415.m04744 cell divsion control protein, putative
similar to SWISS-PROT:P25859 cell division control
protein 2 homolog B [Arabidopsis thaliana]; contains
protein kinase domain, Pfam:PF00069
Length = 257
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -3
Query: 563 VDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITH 396
V QLF V H +H + ++ LD +LK +AD G +R ++ TH
Sbjct: 121 VQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILK-IADLGLSRAFTVPLKAYTH 179
Query: 395 EYFSGWRRRRLPALGRFYF 339
E + W R LG ++
Sbjct: 180 EIVTLWYRAPEVLLGSTHY 198
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 251
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 251
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 141 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 251
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 387 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 488
+IFVG L +VREL + FG + D+V++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 75 FNLCYILLFFVHSNP*SKMPGTG-TFKIF 158
F LCYI+LF +H++ +KM G F +F
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 384 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHLD--ATGDVNDAIKE 542
T +++ NL ++REL+ + G + I R G + D A+++
Sbjct: 107 TTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
Query: 543 LNGMMVDGQPMKVQL 587
N +++DG+PMK+++
Sbjct: 167 YNNVLLDGRPMKLEI 181
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 375 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 482
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Frame = +3
Query: 150 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 305
K+F+G L+ T + + F KYG ++E I+ + YGFV ++ + A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 306 LNGELVHGQAIKIEAA----KSRKAPS 374
+ +++G+ A + RK+P+
Sbjct: 78 -STPIINGRRANCNLASLGGRLRKSPT 103
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 153 IFIGNLSDKTTEADLRPLFEKYGTVVE---CDIVRNYGFVHMENEQVGREAIQNLNG 314
+FI NL +TT L+ LFE+Y E D FV E++ A+Q L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 233
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 369 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 524
P+ TKI+V L TR + F++FG +V +V + +GFV
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 525 NDAIKELNGMMVDGQPMKVQLS 590
A + N +DG+ + +L+
Sbjct: 64 TRACENPN-HTIDGRTVNCKLA 84
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 27.5 bits (58), Expect = 7.1
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 246 RNYGFVHMENEQVG--REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 419
+ YG V M+ ++VG R+ + +V + E+ R +FVGNL K
Sbjct: 131 KKYGSVEMKEKKVGEKRKKADEVADTMVSKEGFDDESKLLRT--------VFVGNLPLKV 182
Query: 420 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 548
+ + + F KFG VE +R+ V T +K++N
Sbjct: 183 KKKVILKEFSKFGE-VESVRIRSVPIVDSKRTRKGAIMLKQIN 224
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 246 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 362
RN+G H +N+ V E + + HG +K + + R
Sbjct: 11 RNHGGTHCQNDAVDEENRRRRHNHHTHGDEVKCSSKRCR 49
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 480 VRNYGFVHL---DATGDVNDAIKELNGMMVDGQPMKVQL 587
V + FVH ++ G DA + N +++DGQP+KV L
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCN-LILDGQPLKVSL 112
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 472 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 368
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1036
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -3
Query: 503 MHEAVVTHDIALDDRPELLKQLADFGRARLVR 408
+H V + +I LD++ E LADFG ARL+R
Sbjct: 877 IHRDVKSSNILLDEKFEA--HLADFGLARLLR 906
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +3
Query: 135 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGR 290
G+ + + N+ +LR FE++G V + I R+Y FV +
Sbjct: 43 GSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAG 102
Query: 291 EAIQNLNGELVHGQAIK-IEAAKSRKAPSTPTTK 389
EA +++N G+ I + A++SRK P K
Sbjct: 103 EAQRSMNRRSFAGREITVVVASESRKRPEEMRVK 136
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 60 FGVHIF-NLCYILLFFVHSNP*S-KMPGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVV 230
F H+F + YIL + +N + ++P K+ + N +D KT+ +++ + + +
Sbjct: 37 FRFHLFFSNAYILFTSIRNNKQNTELPIIK--KVVVPNRADIKTSVEEVKAIIDDSEALY 94
Query: 231 ECDIVRNYGFVHMENEQVGREAIQ 302
EC I ++ +NE +G+E ++
Sbjct: 95 ECLIEEGEEYLLEKNEMMGKEIVK 118
>At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GI:5924383 from [Daucus
carota]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 361
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 192 DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL 308
D+ L EK + CD +GF + N V E ++N+
Sbjct: 66 DISNLDEKSVSKAVCDAAEEWGFFQVINHGVSMEVLENM 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,702
Number of Sequences: 28952
Number of extensions: 233267
Number of successful extensions: 1336
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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