Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j21r
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.16
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.37
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.37
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 31 0.85
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 1.1
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 29 2.6
At3g49200.1 68416.m05377 hypothetical protein 28 6.0
At1g49590.1 68414.m05560 formin-binding protein-related similar ... 28 7.9
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 7.9
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 7.9
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 7.9
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -3
Query: 679 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 500
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 499 NLEGKVARITG 467
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -3
Query: 679 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 500
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 499 NLEGKVAR 476
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -3
Query: 679 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 500
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 499 NLEGKVAR 476
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 31.1 bits (67), Expect = 0.85
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +3
Query: 318 LTKKSMCPIAMPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
L S+ PI+ KP + P+ S+ I+ S+ SRS + SR+ + P ++ ++
Sbjct: 4 LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59
Query: 498 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 641
FL V +L + S N R VA++ V ++++ V
Sbjct: 60 FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 439 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHN--- 269
N + L N Q +EV+ + G L + H RL++ T+ LC N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476
Query: 268 -RAYEVFAATITHGKHYGNQCSTE 200
R V + G H +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -3
Query: 514 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 356
G+ +N G R G+ SA D + + A+ V+ ++ TDGS + +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207
Query: 355 LGIAIGHIDFFVNGRLVQP 299
+GIA+G +D +V + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -3
Query: 496 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGIA 344
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175
>At1g49590.1 68414.m05560 formin-binding protein-related similar to
formin binding protein 21 (GI:3550080) [Homo sapiens];
similar to formin binding protein 21 (GI:3550077) [Mus
musculus]; similar to Dinap1-interacting protein 1
(GI:8745458) [Crypthecodinium cohnii]
Length = 242
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 170 ISS*NGYCQTCKAWVWNVPSKYRH 99
+S N +C+ CK W+ N P+ R+
Sbjct: 6 VSQGNKWCEFCKIWIQNNPTSIRN 29
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 304 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 194
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 304 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 194
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 304 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 194
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,936
Number of Sequences: 28952
Number of extensions: 335398
Number of successful extensions: 854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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