Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12j21f
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      73   1e-13
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  71   5e-13
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            64   1e-10
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 31   0.93 
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   2.8  
SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           29   3.8  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 18/145 (12%)
 Frame = +2

Query: 206 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLRSGNYNVIVVDWSSFSLSTYS 361
           FN +   V+IIHG +G T  T+I   V       K+  L  G++NVI+VDW   +   ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160

Query: 362 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGK---VARI 520
            AV     VG+  A  L+ L+      L  VH++GF+ GAHVAG  GR ++ +   + RI
Sbjct: 161 RAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRI 220

Query: 521 TGLDPSARDW---ENNVLRLGTNDA 586
           T LDP+A  W    +  +RL T+DA
Sbjct: 221 TALDPAAM-WFHKHHEDVRLDTSDA 244


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +2

Query: 206 FNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFS--LSTYSTAVMAV 379
           F  +  +V+IIHG   +   +   +++D  L+    NVI VDW S +  L+ Y  A    
Sbjct: 19  FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHVAAGNT 78

Query: 380 TGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 523
             VG+ +A  +  ++      L +VH++G +LGAHVAG  G  L GKV RIT
Sbjct: 79  RVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
 Frame = +2

Query: 281 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 445
           +KD  LR  + NVI+VDW   +   Y  AV     VG+ +A F+K  L L  ++     H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174

Query: 446 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQ 589
            +GF+LGAH++G  G+ L+  G+ + RITGLDP+   ++     +RL   DAQ
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQ 227


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
 Frame = +2

Query: 281 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 448
           ++ A ++  + NVI  DWS  +   Y  A      VG+ I   +K L           ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691

Query: 449 VGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDA 586
           VGF+LGAH++G  GR +     K+ RITGLDP++  + N +V +RL  +DA
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDA 742


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 101 RFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTIN 274
           R+    K Y + ++ R  +   + HF  G++PA  ++NN D+   +  H  + T  IN
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARIN 602


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 197 AAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMA 376
           A+ ++      VI HG++ + +T+    ++ A L+  + NV++ DW   +   Y  A   
Sbjct: 95  ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQATAN 154

Query: 377 VTGVGS 394
              VG+
Sbjct: 155 TRLVGA 160


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +2

Query: 446 IVGFNLGAHVAGVTG---RNLEG-KVARITG 526
           ++GF+LG HVAG  G   +N  G K+ RI+G
Sbjct: 21  VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 398 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 538
           + +FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 236 IHGHSGTATTTINPIVKDAFLRSGNYNVIV---VDWSSFSLSTYSTAVMAVTGVGSSIAT 406
           + G   T TTT N ++K A L++G+Y V +   VD+    + +YS   + VT     +  
Sbjct: 58  VTGPRNTITTTKNALIKAASLKAGDYFVRLSASVDYVQ-GMVSYSYGFVRVTAAKPRV-K 115

Query: 407 FLKN 418
           FL+N
Sbjct: 116 FLRN 119


>SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 295 KRVFNNRVDRRRSSATVTVYYYDNIPIIVKGRSRIVSSGKVVFGECNWVSLC 140
           K + N     RR S     Y+  + P  V  RS  +    +V   C+WV+LC
Sbjct: 78  KTIINQYPAARRYSVITRYYFGVSRPFSVINRSSSIVPKGLVLILCSWVTLC 129


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 407 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 538
           FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 1   FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,583,964
Number of Sequences: 59808
Number of extensions: 387044
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)