Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j17r
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi... 31 0.88
At3g56410.2 68416.m06274 expressed protein 29 2.0
At3g56410.1 68416.m06273 expressed protein 29 2.0
At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein ... 29 2.7
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ... 29 3.5
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con... 29 3.5
At3g12170.1 68416.m01518 DNAJ heat shock N-terminal domain-conta... 28 4.7
At2g45280.1 68415.m05636 DNA repair family protein contains simi... 28 4.7
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 28 6.2
At4g16730.1 68417.m02527 terpene synthase/cyclase family protein... 28 6.2
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 28 6.2
At2g24230.1 68415.m02894 leucine-rich repeat transmembrane prote... 28 6.2
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 28 6.2
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 27 8.2
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 8.2
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 27 8.2
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 27 8.2
>At5g37310.1 68418.m04481 endomembrane protein 70, putative
multispanning membrane protein, Homo sapiens,
EMBL:HSU94831
Length = 564
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 170 VLSEFLFVQGCEFILGEFTDNIVNVGSEVASAKSVSGPFNSLTDSFNHF 316
+L FLF+ G ++ + +D+ VG +V + GPF++ ++++ +F
Sbjct: 10 LLLVFLFLYGVSPVISDGSDHRYKVGDDVPLYANKVGPFHNPSETYRYF 58
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 218 EFTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVENINKEMDVNVVIFQEIDHS-FEFRQ 394
E T++I N S+ SA + S P NSL + F+ ++++ + V I + +HS +E+
Sbjct: 706 EDTEHISNTISDAKSATTHS-PLNSLVNENQRFIGHLDQSGEATVTISRIQEHSKYEYEN 764
Query: 395 V 397
+
Sbjct: 765 L 765
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 218 EFTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVENINKEMDVNVVIFQEIDHS-FEFRQ 394
E T++I N S+ SA + S P NSL + F+ ++++ + V I + +HS +E+
Sbjct: 659 EDTEHISNTISDAKSATTHS-PLNSLVNENQRFIGHLDQSGEATVTISRIQEHSKYEYEN 717
Query: 395 V 397
+
Sbjct: 718 L 718
>At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein
contains DHHC zinc finger domain PF01529
Length = 307
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 632 GKNESRYCVYGLD-RSWLLVAATEEELRR 549
GK ++ V+G+D R WL+ TEE+LRR
Sbjct: 261 GKKKNFEQVFGMDKRYWLIPGYTEEDLRR 289
>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 862
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 263 AKSVSGPFNSLTDSFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGE- 439
AK V + TD F+E M V QE DHSF Q L+D + VL E
Sbjct: 677 AKPVMNHYMEATDG--SFIEEKESAM---VWHHQEADHSFGSWQAKELLDHLESVLTNEP 731
Query: 440 -VVKR 451
VVKR
Sbjct: 732 VVVKR 736
>At1g78610.1 68414.m09161 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 856
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 463 PQIRCNARTNARYHDQPRP*LCQGNHGSFLRSSSSVAATRSQERSS 600
P R ++R+N +D C GN+ RSSS++ R++ R S
Sbjct: 133 PVGRRDSRSNTNNNDDGEVVKCSGNNAPIQRSSSTLLKMRTRSRLS 178
>At3g12170.1 68416.m01518 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI7 DnaJ
homolog subfamily B member 8 [Mus musculus]; contains
Pfam profile: PF00226 DnaJ domain
Length = 262
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 316 EMIETIGERVKRARHTLSGR-DFTSYINDIIGEFPKDKLAALYEQKLAED-EEFRVALEN 143
++I +G+ KRA + +G D D++ +D A+Y++ ED EEF
Sbjct: 58 KVISILGDEEKRAVYDQTGSVDDADLSGDVVDNL-RDFFKAMYKKVTEEDIEEFEANYRG 116
Query: 142 LQSEEWDAV 116
+SE+ D +
Sbjct: 117 SESEKNDLI 125
>At2g45280.1 68415.m05636 DNA repair family protein contains
similarity to Swiss-Prot:O43502 DNA repair protein RAD51
homolog 3 [Homo sapiens]
Length = 363
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 308 NHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTLELLK 469
NH + I++ DV VVI I +F FRQ + + Q + VL E+ + ++L K
Sbjct: 228 NHLEKFISENKDVKVVIVDSI--TFHFRQDYDDLAQRTRVL-SEMALKFMKLAK 278
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 27.9 bits (59), Expect = 6.2
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = -3
Query: 649 PQRSNPGKMKVAIVFMGLIALGFSLPQPKKSFVENFRDFLDIIKDEAGHDI--EHLFEHY 476
P++S P +++ V A G P PK+ ++N + +D K+E D E + E +
Sbjct: 406 PKQSRPPQLEETDVKRKRNAPG---PSPKEPAMKNQKSEMDYDKEETAEDCFGEPVPERF 462
Query: 475 IEFEEFQRSFDYLTTKDFRDLIYEM-EDLPEF 383
I E +RS K+ D +Y+M ED+ +F
Sbjct: 463 I--VEMRRSL-----KELEDQMYQMHEDMKDF 487
>At4g16730.1 68417.m02527 terpene synthase/cyclase family protein
similar to myrcene/ocimene synthase [GI:9957293];
contains Pfam profile: PF01397 terpene synthase family
Length = 547
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 226 GEFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAV 116
G+ PK +YE + A +EE R ++++ S+ WD +
Sbjct: 453 GDSPKSVQCYMYETR-ASEEEARRHMQSMISDSWDII 488
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 173 LSEFLFVQGCE-FILGEFTDNIVNVGSEVASAKSV-SGPFNSLTDSFNHFVENINKEMDV 346
++ FLF Q + F L F +NI E+ K V S +++ N F+ I MDV
Sbjct: 1461 IARFLFSQFSDSFELSAFMENI----KELMYRKPVCSDDYSAKLHLQNQFMSQIINHMDV 1516
Query: 347 NVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKR 451
V +++ ++V ++D + + ++ + + +
Sbjct: 1517 EVPHLGVVENRLNDKKVLIVLDNIDQSMQLDAIAK 1551
>At2g24230.1 68415.m02894 leucine-rich repeat transmembrane protein
kinase, putative
Length = 853
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 254 VASAKSVSGPFNSLTDSFNHFVENINKEMDVNVVIFQE 367
V +S+SGPF+ TDS +V ++ + V VVIF++
Sbjct: 493 VKEEQSISGPFSFQTDS-TTWVADVKQANAVPVVIFEK 529
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 301 IGERVKRARHTLSGRDFTSYINDIIGEFPK 212
+G R++RA T +F SY+NDI + P+
Sbjct: 494 LGARIRRAGSTSQKDEFVSYMNDIKEKNPE 523
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 490 LFEHYIEFEEFQRSFDYLTTKDFRDLIYEMED 395
LFE EFEEF+ + D+L ++ +++ + ED
Sbjct: 16 LFEDDDEFEEFEINEDWLEKEEVKEVSLQWED 47
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 192 TNRNSLRTKNLE*LLRTFRARNGTPCSVLCGRVSNSRPKLI 70
+N +S+ + + L+R+F PCS+ CGR+ N R +L+
Sbjct: 267 SNLSSIGSPSSGILMRSFIPM---PCSLTCGRLMNLRERLV 304
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 490 LFEHYIEFEEFQRSFDYLTTKDFRDLIYEMED 395
LFE EFEEF+ + D+L ++ +++ + ED
Sbjct: 17 LFEDDDEFEEFEINEDWLEKEEVKEVSQQWED 48
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 490 LFEHYIEFEEFQRSFDYLTTKDFRDLIYEMED 395
LFE EFEEF+ + D+L ++ +++ + ED
Sbjct: 17 LFEDDDEFEEFEINEDWLEKEEVKEVSQQWED 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,810
Number of Sequences: 28952
Number of extensions: 229522
Number of successful extensions: 918
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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