Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12j12r
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1744 + 29171372-29171438,29172789-29173768                       32   0.31 
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    31   0.55 
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720...    27   8.9  

>07_03_1744 + 29171372-29171438,29172789-29173768
          Length = 348

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 329 WSHGSTGLLLEATSGIIHSISTAPLLSFHLYYFAQY 436
           W  GS   ++  T+G+IH+ S  PL SF +    QY
Sbjct: 20  WEGGSITEMMAVTNGVIHASSREPLFSFGVIADVQY 55


>04_04_0179 -
           23342764-23342973,23343185-23343340,23343535-23343593,
           23344150-23344226,23344309-23344587,23344800-23344885,
           23344960-23345027,23345721-23345904,23346071-23346204,
           23346776-23347039,23347613-23347677,23347833-23348407,
           23348501-23348680,23348765-23348928,23349008-23349261,
           23349405-23349562,23349808-23349948,23350176-23350282,
           23350651-23350737,23350812-23350901,23350974-23351055,
           23351370-23351561,23351748-23351816,23351959-23352294,
           23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 165 LKFQYASNESSWQSLSRIIKLYFKKYNNMAKHTVNDEN 52
           +K Q  S  S W+   R ++ YF+ +N+ A H + +EN
Sbjct: 333 MKLQVESTRSQWEEDLRRLESYFEAHNHNAYHKLLEEN 370


>12_02_0881 -
           23970143-23970433,23970814-23971116,23971490-23972077,
           23972606-23972761,23972852-23972910,23974294-23974561
          Length = 554

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 356 KAAQWIRETISRASTARRLAEGRPGLVDFR 267
           K   W+RE +S   T  RL    PGL+ FR
Sbjct: 451 KYHHWVRENLSSNFTLWRLGTLPPGLIAFR 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,713
Number of Sequences: 37544
Number of extensions: 241106
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)