Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j12f
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 47 2e-06
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 2.8
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 4.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 6.5
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.6
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 47.2 bits (107), Expect = 2e-06
Identities = 38/131 (29%), Positives = 59/131 (45%)
Frame = +2
Query: 185 GSSGYARNVVMFLGDGMSVATLTAARTLLGQRRGQTGEESRLSFEHFPTVGLSKTYCLDA 364
G++ + V+M + DGM +L+ R+ + + G L EH +G S+T +
Sbjct: 54 GTNEKPKFVIMMVSDGMGPGSLSMTRSFVETLNDKEGYRLPLD-EHL--IGSSRTRSSSS 110
Query: 365 QVADSACSASAYLCGAKANLGTIGVSGHVARHHCTAATDAAHQLASIASWALDADRDAGI 544
+ DSA A+A+ C K G +GV D +I A +A GI
Sbjct: 111 LITDSAAGATAFSCANKTYNGAVGV------------LDNEKPCGTILEAAKEAGYLTGI 158
Query: 545 VTTTRVTHASP 577
V T+RVT A+P
Sbjct: 159 VVTSRVTDATP 169
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 83 RRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGYARNVV--MFLGD 229
++ L++P P PE + + +A+S +GE DG + N+ +F GD
Sbjct: 184 KKKLESPEIPLPEQKKVHLGYEAKSNVGE----DGYKAFVSNLKEHIFNGD 230
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/84 (27%), Positives = 32/84 (38%)
Frame = -3
Query: 270 SSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSDSSSGAGVEGVCR 91
SSV A +S D SP N + F P S + + S A + + SS+ VE
Sbjct: 121 SSVEATISPLKDTKSPSNASVFPIKP-TESKTSTTKDSETAKEEDDASSSTTKAVEATTS 179
Query: 90 ERLDPTSSRW*PSLSNPYRRPQEP 19
+ + S SN R P
Sbjct: 180 KASSAHTDTLATSASNSDRGASTP 203
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -3
Query: 306 RDSSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSD 127
+ S+P+ SS ++ +S ++++ S + T +PS + +PSS S S
Sbjct: 479 QSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSV 538
Query: 126 SSSGAGV 106
SS + +
Sbjct: 539 LSSSSSI 545
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -3
Query: 318 SKDNRDSSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRD 139
S++ D+ P + ++ + SV P P+ R+ + PS +P+S+ A
Sbjct: 574 SQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPS 633
Query: 138 QYSDSSS 118
S SSS
Sbjct: 634 SASLSSS 640
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 167 PPAHSGRRATSTPTPARGPALRASAGSASTPRHPG-GNRPY 48
PP++S A +TP + A A A +AS R G +PY
Sbjct: 63 PPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPY 103
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 170 APPAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYL 45
+P + + S+P P+R P R+S+ ++ + P +R L
Sbjct: 136 SPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTL 177
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 116 PELESEYWSRDAQSELGERAWYDG 187
P L E W RDA++ + E W+ G
Sbjct: 262 PNLRDEQWLRDAETAVVEE-WFGG 284
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 8.6
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Frame = -3
Query: 276 WPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSDSSSGAGVEGV 97
+ S +A+S + SP + Y P+Y SPS S YS +S
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTS-PSYSPTSPSYSPTSP 1597
Query: 96 CRERLDPTSSRW*PSLS--NPYRRPQEPAASSES 1
P+ S PS S +P P P+ S S
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,091
Number of Sequences: 5004
Number of extensions: 36700
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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