Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j06f
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 149 4e-37
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.37
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.6
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 2.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.5
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 4.6
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 6.1
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 149 bits (360), Expect = 4e-37
Identities = 80/168 (47%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = +3
Query: 81 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTD 257
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT QG D+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 258 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 437
E+ ++V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 438 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGL 581
+K IL FK+ F+ GESMD D MV +M YR+ DG P M+FFK GL
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGL 163
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 276 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 422
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 554 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 462
WY++T K+SI N+ + +R P + FL
Sbjct: 12 WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 118 ISSPVIMSL*IFILMDWRRLKII 50
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 140 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 30
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 183 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 326
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 552 VFAYHQSLYIPSWQPC-HHN 496
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 296 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 198
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 476 ELKFLKPAEDVFHYFVHVCFKYFNLVR 396
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,656
Number of Sequences: 5004
Number of extensions: 47726
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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