Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j05f
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 0.87
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 1.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 1.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 1.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 1.5
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 2.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.0
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 26 4.6
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 6.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 8.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 8.1
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 8.1
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 28.3 bits (60), Expect = 0.87
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 352 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 438
W + HCL K P+L V H+E +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 110 WTCHLQAWGGPRQPQRAPQKVFRI 39
WT HL +WG P + QKV +
Sbjct: 22 WTIHLGSWGNPMPNRACVQKVLPV 45
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 262 HRCSLHCCCIHTW--KSLWKSSSDSRHKPMELWRFSPHCLQKHH 387
H+C HC C H + + + + HKP W+ HC HH
Sbjct: 167 HKCKEHCSCHHDKFPRPVPHNGTKPDHKP---WKHEEHC---HH 204
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 202 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTWKS 306
W L LCLR + HR LG H + + W +
Sbjct: 36 WNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSN 70
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 386 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 496
T Y+S+ I G+L++SS I N V ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 200 NGIF--IRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN-SGGSLHT 370
NG F + F G T+ VL + A + S+S + + W+ G SLH
Sbjct: 63 NGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHP 122
Query: 371 VSRNITHPHYVS 406
+ +HPH V+
Sbjct: 123 ERQTSSHPHQVT 134
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 79 PGSRKERHKKYSVFYVHFSRRPN 11
P ER + +S+F++HFS++ N
Sbjct: 41 PDRVHERREDWSLFFIHFSKKSN 63
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 4.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 196 HCYHMGVAALSC 161
HCYH G+ AL C
Sbjct: 165 HCYHHGITALLC 176
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 202 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTW 300
W L +C+R HR+LG H + + +W
Sbjct: 42 WNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 358 TSRVPLVCADCQTKISRETSKCEYSNNAMSSGEHRACGEH 239
TS A +T +SR SK E + SS + GEH
Sbjct: 1268 TSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEH 1307
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +1
Query: 211 HQELCLRRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSP 366
H E+ + +T+ S+ CI +K W S H+P +L+ P
Sbjct: 88 HVEVIDYNIECKKTVALSMDSITKTCILNYKLEWTYSGVLLHRPWKLFSLKP 139
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 321 RRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTK 220
R F +++ N ++ A+S E A STEPP +
Sbjct: 240 REFFQKIGFKNDNQLENKAISEEEANSTEPPNVE 273
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 178 VAALSCLATPHNTSVPVHMLVEDGHVIFRLGEGP 77
V L H+T H LV DG V+ R+ +GP
Sbjct: 934 VEELEAAKKDHDTPSGSHALVIDGSVLKRVLDGP 967
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 170 PELPGY--PPQYERSG--PHARRRWTCHLQAWGGPRQPQR 63
P++PG P +R+G P A +R Q GGP PQR
Sbjct: 720 PQMPGMQQPMAPQRTGMQPMAPQRTGMQPQMTGGPMLPQR 759
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 287 VFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNIT 388
VF GS L GTN WN L +++ N T
Sbjct: 172 VFYRGSEGIELAACTGTNVWNYSNVLTSINENGT 205
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 179 PHMVAMTNGIFIRSFVC-GGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN 349
P + + G I F+ GG+V+ + L A+ CI+ + + G +S N+WN
Sbjct: 181 PVICGLIVGCLIGYFIYRGGNVMNLQWFLIASTCILYLISAGLMS-KATFYFEMNKWN 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,809
Number of Sequences: 5004
Number of extensions: 50823
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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