Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j02r
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1275 - 35395228-35395642,35396682-35397250 34 0.15
02_05_0397 + 28641033-28641231,28641385-28641485,28642012-286420... 33 0.34
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 32 0.59
03_01_0056 - 471338-471919,472013-472213 32 0.59
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 30 1.8
04_03_0690 + 18751601-18753667 30 1.8
04_03_0314 - 14238620-14240128 30 1.8
03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730... 30 1.8
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 30 2.4
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 30 2.4
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911... 29 4.2
03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632... 29 4.2
08_01_0848 + 8321717-8322198,8322297-8322687 28 7.3
06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 28 7.3
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966... 28 7.3
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 7.3
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 28 7.3
12_02_1081 + 25914180-25914371,25918121-25919104 28 9.7
10_08_0465 + 18125859-18125876,18126214-18126555 28 9.7
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631 28 9.7
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 28 9.7
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGFWEYGGFNNRPGIHNPWRYGS 240
+FH Y + WT D I F +DD I R + G GF RP W YGS
Sbjct: 176 DFHHYAILWTSDHIIFLVDDVPIRRYGRRSAG--GAAGFPARP----MWVYGS 222
>02_05_0397 +
28641033-28641231,28641385-28641485,28642012-28642068,
28642087-28642295,28642378-28642924
Length = 370
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 392 HRYQLEWTPDFISFRIDDSEIGRVT--PGNGG 303
HRY + W P I F IDD+ I V PG GG
Sbjct: 177 HRYSVLWAPTHIIFYIDDTPIREVIRHPGMGG 208
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 31.9 bits (69), Expect = 0.59
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGR 324
+FH Y + W PD I+F +DD I R
Sbjct: 169 DFHHYAILWNPDAITFFVDDVPIRR 193
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGG------FWEYG 288
+FH Y + W PD I F +DD + R G W YG
Sbjct: 126 DFHHYAILWNPDHIVFLVDDVPVRRYPRAAGNTFPDRQMWAYG 168
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 395 FHRYQLEWTPDFISFRIDDSEIGR 324
FH Y + W PD I F +DD I R
Sbjct: 173 FHHYAILWNPDQILFLVDDVPIRR 196
>04_03_0690 + 18751601-18753667
Length = 688
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 434 HWVRRNSAGYDTNFHRY-QLEWTPDFISFRIDDSEIGRVTPGNG 306
HW+RR N Y ++ WT +SF DD+ GR G+G
Sbjct: 546 HWIRRRRGKIRQNSKNYLRISWT-KVLSFLKDDAHGGRSGSGSG 588
>04_03_0314 - 14238620-14240128
Length = 502
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 397 LVSYPALFLLTQCAFSHPLSP 459
++ YPALF L Q SHPLSP
Sbjct: 129 VLRYPALFRLFQAPTSHPLSP 149
>03_02_0309 -
7307241-7307715,7309383-7309591,7309730-7309830,
7309918-7310149
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGRV 321
+FHRY + W+ D I F +D++ I V
Sbjct: 167 DFHRYAIRWSHDTIIFYVDETPIREV 192
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 29.9 bits (64), Expect = 2.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 527 CFCCLWIRQGRFPQKLAR 580
CFCC+W++ G F + L +
Sbjct: 108 CFCCIWLKNGLFNRDLVK 125
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 401 TNFHRYQLEWTPDFISFRIDDSEIGRV--TPGNGG 303
T FHRY + WT I F +DD I V TP G
Sbjct: 154 TEFHRYSILWTRAAIVFFVDDVPIREVRRTPAMTG 188
>05_03_0168 -
9116648-9117775,9118699-9118885,9119724-9119821,
9119948-9120114,9122242-9122578
Length = 638
Score = 29.1 bits (62), Expect = 4.2
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +3
Query: 234 HLTSISPRVMNTGSIVEAAV----FPKATISRSDTTDLRV-VNSKAYEIWCPFQLVTMEI 398
H+T SPR M TG I AV P ++ TT V SK + CPF + I
Sbjct: 434 HMTLTSPRAMVTGQIFGVAVGSILCPCVFLAFQSTTKPNAPVGSKQSDYPCPFAGLYRAI 493
Query: 399 SVV-SGAVPSDP 431
V+ +G V P
Sbjct: 494 GVIGTGGVKELP 505
>03_06_0486 -
34261577-34261692,34261830-34262094,34263164-34263277,
34263371-34264795
Length = 639
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -2
Query: 550 SNPEATKTCSSTVYTLVHRKLVRHCTTDLSPD*ADGKKRTGSEGTAPDTTLISIVTNW 377
+ P+AT S +Y VHR+L R D +R G+AP TT W
Sbjct: 265 NGPDATDFLVSNLYAAVHREL-RGLLWDQREQNVQHDQRPDQPGSAPSTTASDNQDQW 321
>08_01_0848 + 8321717-8322198,8322297-8322687
Length = 290
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDD 339
+FH Y++ W P I F++DD
Sbjct: 147 DFHTYKIIWNPQNIIFQVDD 166
>06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103
Length = 290
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEI 330
+FH Y + W P I F +DD I
Sbjct: 136 DFHTYSILWNPKHIIFMVDDMPI 158
>05_07_0179 +
28195929-28195954,28195966-28196286,28196397-28196664,
28203206-28203667
Length = 358
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 454 SPGKGP*CSVEPASCVP-MCRPL-RNMFLLPLDSTRSISPEAGQVPYLLYAGINQIAGQS 627
S G+ P V +SCV R + N L R +P G VPY L + + G+S
Sbjct: 6 SGGRAPTKDVARSSCVSKQWRDIVTNPSFRKLHHDRHAAPPKGDVPYALLVSTDSVDGES 65
Query: 628 QSPEGIFALTS 660
S AL S
Sbjct: 66 VSTVFPAALVS 76
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 70 VGSQPPWPFQKSVAAIGELFHQGLGIGFLTPSGKKPLVPP 189
V S W F A+ + G + +++PSG+K L+ P
Sbjct: 345 VNSYIAWDFSLQQGALNMVLDIGFHVEYISPSGQKTLILP 384
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 30 EGSVLTIVNVQIPRRKPTALAIPEICGCH 116
EG++L++VN PT L E CG H
Sbjct: 1185 EGAILSVVNCSTESFSPTILFSTEHCGIH 1213
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 555 PCRIQRQQKHVPQRSTH 505
PCR++RQ+ H P+R H
Sbjct: 15 PCRLRRQELHRPRRPNH 31
>10_08_0465 + 18125859-18125876,18126214-18126555
Length = 119
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 404 DTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGFWE 294
D H + E DF+ R G V PG G WE
Sbjct: 25 DYGAHSWVYEGIADFVRLRAGYPAAGWVQPGQGNSWE 61
>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
Length = 361
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 227 FDQKFYLIINLAVGGTNGFFPDGVKNPIPKPW 132
F + YL+ +L G TN + G K +P+ W
Sbjct: 300 FKENDYLLFHLTPGETNHYIIGGPKEIVPRNW 331
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -1
Query: 572 ASGEIDLVESRGNKNMFLNGLH-----IGTQEAGSTLHYGPFPGLSGWEKAHWVRRNSAG 408
ASGE+ L + G + + L + IG G + P+ G W+ A W +G
Sbjct: 303 ASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSG 362
Query: 407 YDTNFHRYQLEWT 369
+ N H ++E T
Sbjct: 363 ENKN-HLVEIEAT 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,186,149
Number of Sequences: 37544
Number of extensions: 625771
Number of successful extensions: 1693
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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