Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j02f
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 28 0.96
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 28 1.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 1.7
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.2
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.9
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 5.1
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 26 5.1
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 9.0
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 0.96
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 442 PTNILNPIKSARIRTVHSFSFQYGKVEVRAKMPSGDWL 555
P N +P+K I+ H + Q G EV ++ P+G+ L
Sbjct: 80 PENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGL 117
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 70 LGVVALISASKACTPSVTTVSGTHAPVTVCSGQLIFADD--FVDFDLEKWQHENTLAGGG 243
L + A +S + ++ V T P+ V ADD F E W H+ +L G
Sbjct: 48 LALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRG 107
Query: 244 NWEFQYY 264
N+ Q Y
Sbjct: 108 NYLTQRY 114
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 531 RSNFYFTILEAEGMNGANTCTFNGV 457
++ +YF +LE EGM+G T+ +
Sbjct: 1163 KARYYFDLLECEGMSGKEPSTYENM 1187
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 535 MPSGDWLWPAIWLMPAYNKYGTWPASGEIDL 627
+P G WPA W + WP GEID+
Sbjct: 215 LPYGCGTWPAFWTLG-----DDWPNGGEIDI 240
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +1
Query: 91 SASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDLEKWQHENTLAGGGNWEFQY 261
S+S + +P+ ++VSG + L ++D+FV+ + + + + + G + F+Y
Sbjct: 281 SSSASASPTSSSVSGKRGLAWIPGTDLGYSDNFVNKGINWYYNWGSYSSGLSSSFEY 337
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 475 RIRTVHSFSFQYGKVEVRAKMPSGDWLWPAIWLMPAYNKYGTWPASGEIDL 627
++ ++ S + K+ +R + GD L A + A Y T PA+G+I L
Sbjct: 774 QLESMIRLSEAHAKMHLRNVVEVGDVLEAARLIKTAIKDYATDPATGKISL 824
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 169 LIFADDFVDFDLEKWQHENTLAGGGNWE 252
+IF DFVD DL+ QH+ G+WE
Sbjct: 292 MIFQFDFVDLDLDPNQHKYI---EGSWE 316
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 320 PLRPTSSDPHFYIAVA*TLKEAHPPTDALTLNGTVASVLVPPL 448
P T PH Y + + E P+D L+ + V + +P L
Sbjct: 157 PSSLTGEKPHLYARIDSAINEPFTPSDRLSPSSLVPLLKLPAL 199
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 343 SAFLHSGRLNIEGGAPADRCTNPQWYGCERVGTPTNILNPIKSARIRTVHSFSFQYGKVE 522
+ + SGR + AD T + E + T ++ N I SAR+ + +V
Sbjct: 807 NVLMDSGRGKLLQKMVADAITEEGYDDFETIVTINHLENKIASARLLKLDDEFLVTSEVY 866
Query: 523 VRAKMPSGDW 552
VR M G W
Sbjct: 867 VRLLMHHGLW 876
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 495 GMNGANTCTFNGVQNISGGTNTLA-TVPLRVSASVGGCASF 376
G GAN C FN +N+ T L T R SV A+F
Sbjct: 518 GFRGANACAFN--ENLYPSTKQLCLTKSFRFGNSVAKYANF 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,261
Number of Sequences: 5004
Number of extensions: 55333
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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