Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i22r
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0452 + 20931484-20933872,20933950-20934074                       30   1.7  
09_02_0156 + 5070962-5072351,5072466-5073139                           28   9.2  

>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 393 YTTSQY-CKNLHYANVSYTS*LNLIPQRIEHRLTPLL 500
           + T+ Y C NL Y ++SY + +N +P  I+ RL+P L
Sbjct: 119 FPTALYNCSNLRYLDLSYNTLVNSLPSNID-RLSPRL 154


>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 537 MGDVNANLSIAFTVMALIGVLSSAVSNLTRRYM 439
           +G  N NLS   + MA +G  S+A  + TR Y+
Sbjct: 273 LGSANRNLSSVLSEMAYVGFSSAAGRDNTRHYI 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,237
Number of Sequences: 37544
Number of extensions: 297311
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)