Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i22r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   7.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   7.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.4  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 278 DNALKQFCYNFEH 240
           +N  KQ CYN  H
Sbjct: 96  NNNYKQLCYNINH 108


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 302 YTNSDFNECICVIFVYSYTF*LQ-VIC 379
           Y NS  N CI  +F   + F  + +IC
Sbjct: 52  YCNSAINPCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 302 YTNSDFNECICVIFVYSYTF*LQ-VIC 379
           Y NS  N CI  +F   + F  + +IC
Sbjct: 500 YCNSAINPCIYALFSKDFRFAFKSIIC 526


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 216 SKINRSNTMFEIIT 257
           S +NR+N +FE++T
Sbjct: 260 SILNRTNNIFELVT 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,552
Number of Sequences: 438
Number of extensions: 4754
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)