Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i22f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   3.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.0  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   7.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   7.9  

>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = -3

Query: 373 IFLFGYFKELVQPLFGLKVNIA*DIKITYPVTHK*MCCFRLFVPWKTLANMNALSATAPI 194
           +FLFG    L++PL          +K  YP+ H+ +   +    +   A +  +     I
Sbjct: 20  LFLFGSLILLLRPLIFYSNTTMKKLKTEYPIYHRHLSALKRNFYYTMDAQLGGIRNVVLI 79

Query: 193 -RTCVTVFTTFSTIM 152
            R C      F T+M
Sbjct: 80  NRPCFAASDNFLTLM 94


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 135  VFEPFVGYWLRYELDLPAA--EEAVGAASY 52
            VFE  + + L   LDLPAA  ++ +GA++Y
Sbjct: 965  VFEHLLLFSLEERLDLPAAFLQDLIGASAY 994


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 510 SLIGGVVNLIFPKQTSALI 566
           S IGG+ NLI+P+ T  LI
Sbjct: 49  SRIGGIKNLIYPEGTHFLI 67


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 198 GAVAL-SAFIFANVFHGTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNS 350
           G V + S+F+  +V   TN+++ ++   ++  V+    ++L++   + W NS
Sbjct: 17  GVVGIASSFLVTSVLSLTNSIQSNVGAVISYAVLYFVNSLLSWCMLSSWFNS 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,629
Number of Sequences: 5004
Number of extensions: 40398
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)