Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i17r
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713     30   1.7  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    30   2.2  
03_05_0920 - 28812796-28813325,28814019-28816377                       29   5.2  

>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
          Length = 246

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 744 RSFSVAISR--WTP----WGRSWPNE*RRVPPSASAQFPAGAGRTKSGSAPKWPGWR 592
           RS S+  SR  W P    WG++W +       S S Q  A  GRT + +    PGW+
Sbjct: 180 RSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQ 236


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -3

Query: 572  NQQQGAKPKSNKPVGTTIETTTNESQA*TS--RGRYVWHIIYVVHVDSSCVTLHLN 411
            ++Q+ A+ K+ K VG +  TT+ + +  +S  R   +    +++H+  SCV++HL+
Sbjct: 839  HEQKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRSTEFLLHIKLSCVSVHLS 894


>03_05_0920 - 28812796-28813325,28814019-28816377
          Length = 962

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 593 LHPGHFGAEPDFV-LPAPAGNCADALGGTLLYSLGQDLPHGVH 718
           +HP H G++PD V +    GN       +  YS     P  +H
Sbjct: 544 VHPRHSGSDPDMVKITVAGGNVNGGAAASETYSQASSGPRDIH 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,202
Number of Sequences: 37544
Number of extensions: 408399
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)