Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i14r
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598...   165   2e-41
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365...    41   0.001
06_01_0859 - 6506029-6506133,6506255-6506319,6506461-6506539,650...    31   0.90 
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765...    30   1.6  
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837...    30   1.6  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   2.8  
01_06_1236 + 35613123-35613816,35615809-35615952,35616032-356161...    29   2.8  
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772...    28   6.4  
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521     28   8.4  
04_01_0276 + 3658852-3660894                                           28   8.4  

>01_03_0286 -
           14657682-14657803,14658194-14658419,14659894-14659899,
           14661218-14661298,14662498-14662888,14663207-14663352,
           14665455-14665562
          Length = 359

 Score =  165 bits (402), Expect = 2e-41
 Identities = 85/203 (41%), Positives = 128/203 (63%)
 Frame = -3

Query: 685 MFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFP 506
           M +VGLTGG+A+GKST+ ++FK  GI V+DAD VAR V++ GT  W ++ + FG+ VL  
Sbjct: 1   MRLVGLTGGIASGKSTISNLFKASGIPVVDADIVARNVVQKGTGGWKKIVEAFGNDVLLE 60

Query: 505 DGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFET 326
           +G ++R +LG+IVF D EKR+ LN +  P I S +       +  G   IV+++PLLFET
Sbjct: 61  NGEIDRARLGQIVFSDPEKRQVLNRLLAPHISSGIFWEILKLWIKGCKVIVLDIPLLFET 120

Query: 325 GKLLTFMHKIITVVCEDHQQLERLYKRNDFSEIVARKRINSQMPLHEKVAKSHFVIDNSG 146
            K+  + H +I V   +  Q+ERL  R+  SE  AR RIN+Q+ L  K +++  VIDNSG
Sbjct: 121 -KMDQWTHPVIVVWVNEATQIERLMSRDGCSEEQARNRINAQLALDWKKSQADIVIDNSG 179

Query: 145 DLTNTRNQTESIIKVLRKSKFTW 77
            L  T+ + + +++ +     TW
Sbjct: 180 TLDETKEKFQEVLRNV-SEPLTW 201


>08_02_0034 -
           11435678-11435702,11435787-11435816,11436364-11436501,
           11436646-11436755,11436838-11436867,11437948-11437993,
           11438453-11438622,11439156-11439221,11439299-11439378,
           11440704-11440842,11440933-11441013,11441112-11441147,
           11441414-11441539,11442084-11442179,11443615-11443689,
           11444288-11444434,11445155-11445229,11445485-11445619,
           11445706-11445834,11446161-11446292,11446395-11446598
          Length = 689

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = -3

Query: 676 VGLTGGLATGKSTVLS-IFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLFPDG 500
           V ++G  A+GK T    I +++G+  I   ++ R  +  GT+   + K+Y  +G+L PD 
Sbjct: 92  VMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQ 151

Query: 499 RVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIRIAFSFFFTGHTYIVMEVPLLFETGK 320
            V  + +  +   D+ +R  L    +PR   A  +   S       +IV+E+ L  +  K
Sbjct: 152 VVTDMVVSRLSQPDVRERGWL-LDGYPR-SYAQAQSLESMKIRPDIFIVLEIELYNQFIK 209

Query: 319 LLTFMHKIIT 290
            L  +H+ IT
Sbjct: 210 FL--VHENIT 217


>06_01_0859 -
           6506029-6506133,6506255-6506319,6506461-6506539,
           6506764-6506893,6507231-6507396,6507515-6507569,
           6507693-6507739,6508416-6508614
          Length = 281

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 655 ATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEV 539
           A G  +V  IFKEH  A    D  A K ++ G   WL+V
Sbjct: 132 AVGMPSVAQIFKEHSEAFF-RDNEAMKYMKKGLSVWLDV 169


>09_04_0658 +
           19275129-19275363,19275453-19275544,19276440-19276509,
           19276617-19276735,19277026-19277122,19277229-19277308,
           19277443-19277637,19277727-19277810,19277931-19277991,
           19278682-19278742,19279162-19279255,19279357-19279429,
           19279834-19279916,19280008-19280154
          Length = 496

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 691 RNMFIVGLTGGLATGKSTVLSI----FKEHGIAVIDADEVAR 578
           R  F++G++GG A+GK+TV  +      +H + +++ D   R
Sbjct: 73  RQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYR 114


>08_02_1359 +
           26382605-26382815,26382907-26382998,26383722-26383791,
           26383895-26384013,26384580-26384676,26384781-26384860,
           26384986-26385180,26385460-26385520,26386408-26386468,
           26386900-26386993,26387085-26387157,26387158-26387270,
           26387444-26387587
          Length = 469

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 682 FIVGLTGGLATGKSTVLSI----FKEHGIAVIDADEVARKVLE 566
           F++G++GG A+GK+TV  +      +H + +++ D   R + E
Sbjct: 68  FVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTE 110


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 643  STVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLF 509
            ST++S F+E    + DAD     ++E   KA L+++ +  +  LF
Sbjct: 1555 STLISKFEEAQATISDADTTVNALVEANEKAKLQIQNFKENEALF 1599


>01_06_1236 +
           35613123-35613816,35615809-35615952,35616032-35616184,
           35616572-35616687,35616800-35616967,35617647-35617707,
           35617772-35617824,35618278-35618508,35618600-35618749
          Length = 589

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 598 DADEVARKVLEPGTKAWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIEKRRKLN 434
           +A ++ R++LEP  K  L  KQ   H  L    +   + LG+IV   +++  ++N
Sbjct: 307 NAKDLVRRMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDIVKSRLKQFSRMN 361


>10_05_0004 +
           7717748-7717798,7718107-7718317,7719424-7720079,
           7721296-7721469,7721562-7721678,7722820-7722999,
           7723244-7723290,7724068-7724401
          Length = 589

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 337 LFETGKLLTFMHKIITVVCEDHQQLERLY-KRNDFSEIVARKRINSQMPLHEKVAKS 170
           L E G+++  +   +TV+CED  QL+++  +R  F ++   K  +    L   + KS
Sbjct: 468 LVERGQIVDTLQGEMTVICEDVSQLKQIVDERLSFCKLQRSKMSSLSSSLQSSLHKS 524


>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
          Length = 481

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 474 SPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMESTVLLPV 653
           SP FNL+   +  R P PK      +   P   T   T + +  A P  + +     +PV
Sbjct: 240 SPKFNLIQAAAVQRKPSPKISRHQKKKTSPKGHTAEGTMNFTSIA-PSQVPITQPFQVPV 298

Query: 654 ARPPVSP 674
            +P   P
Sbjct: 299 TQPSHIP 305


>04_01_0276 + 3658852-3660894
          Length = 680

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 163 VIDNSGDLTNTRNQTESIIKVLRKSKFTWYFRAIFM 56
           ++D+  D+  T  +++ +I  L+KSK  W +R + M
Sbjct: 216 IVDSVIDVDKTETESKKVINRLQKSKPEWMWRVMEM 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,035
Number of Sequences: 37544
Number of extensions: 328424
Number of successful extensions: 809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)