Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i14f
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 298 YFFLALHSQTPW 263
           YFF+++ S+ PW
Sbjct: 87  YFFMSMRSELPW 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 AWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIE 531
           +WL+   ++ +  L  DG+ + L  GE++   +E
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLE 199


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 AWLEVKQYFGHGVLFPDGRVNRLKLGEIVFDDIE 531
           +WL+   ++ +  L  DG+ + L  GE++   +E
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFHLLPTGELLVHSLE 199


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 384 YYGNSVFFKYGEHCALACCEATSQSNNEHISFL 286
           YY     +    +   A CEAT+   N+ +S+L
Sbjct: 215 YYAYPYCYNLTPNQPSAQCEATTMQENDKMSWL 247


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 428 KLGLRLSSILDM 463
           KLGLRLS ++D+
Sbjct: 49  KLGLRLSQLIDL 60


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 419 LAQKLGLRLSSILDM 463
           L  K+GLRLS ++D+
Sbjct: 46  LTVKMGLRLSQLIDV 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 406 KVLEPGTKAWLEVKQYFGHGVLFPDGRVNRLKLG 507
           K +EPG   W+ V +Y   G L  +    + KLG
Sbjct: 546 KQIEPGKYEWVRVGKYLS-GELRLNMSAIQFKLG 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,583
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)