Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08r
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)                  29   3.1  
SB_55420| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.1  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)               28   7.2  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    28   9.5  
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)
          Length = 449

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 263 KPNKIIKVCQQCFVSAYLNINSL 195
           K N I+  CQ CF S Y  +NSL
Sbjct: 249 KDNNILHECQSCFRSQYSTLNSL 271


>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 789

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 128 PIYRLTIGTDYLSASVMNVPQCCINSTNLRRNAKWTENPQR 6
           P Y ++   D  S    NV  C +NST +  N  W+  PQ+
Sbjct: 201 PCYNISTDQDVPSQPPENVSACAVNSTAV--NVTWSRIPQK 239


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 408 LDSYISVNLTITYSCLCTYLCLHNNL 485
           LD Y+ V+ T+ ++ L  Y C+H N+
Sbjct: 852 LDVYMFVSFTLVFASLIEYACVHYNI 877


>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 320 ISCRYLRECGQEFESCPK-KKPNKIIKVCQQCFVSAYL 210
           ++C + RE G     CP+ KK +  + VC +C  ++++
Sbjct: 139 VTCFHCRELGHRAADCPQTKKTSAGVGVCYKCRATSHI 176


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 637 VTVSI*LKQSYVFFFKSTEFMYLFSHN-FXIKHFTGIDRI 753
           +T S  + +SYV   K  EF+ ++SH+ F +K    ID +
Sbjct: 767 LTTSETILESYVLALKKDEFLNIYSHDEFFLKWVFSIDNL 806


>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 96   VVRPDGQSVDWVNK*LYF 149
            ++ PDG +VDWVN+ LY+
Sbjct: 984  LLTPDGIAVDWVNRKLYW 1001


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,614,476
Number of Sequences: 59808
Number of extensions: 376016
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)