Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08r
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19420.1 68418.m02314 zinc finger protein, putative / regulat...    29   4.5  
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    29   4.5  
At3g44680.1 68416.m04805 histone deacetylase, putative similar t...    28   5.9  

>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1124

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 344 HNSYPIAKISCRYLRECGQEFESCPKKKPNKIIKVCQQCF 225
           HN Y    + C       +  ++C    PNK  +VC +CF
Sbjct: 699 HNCYNCGLVFCHSCSN-KKSLKACMAPNPNKPYRVCDRCF 737


>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 344 HNSYPIAKISCRYLRECGQEFESCPKKKPNKIIKVCQQCF 225
           HN Y    + C       +  ++C    PNK  +VC +CF
Sbjct: 663 HNCYNCGLVFCHSCTS-KKSLKACMAPNPNKPYRVCDKCF 701


>At3g44680.1 68416.m04805 histone deacetylase, putative similar to
           histone deacetylase-1 (HD-1) [Gallus gallus] GI:2791684;
           contains Pfam profile PF00850: Histone deacetylase
           family; identical to cDNA  histone deacetylase partial
           cds GI:21637258
          Length = 426

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 126 NLQIDHRDGLPQCFCYECATMLYKFHKFKEK 34
           ++ + H DG+ + F +    M   FHKF +K
Sbjct: 170 DIDVHHGDGVEEAFYFTDRVMTVSFHKFGDK 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,364
Number of Sequences: 28952
Number of extensions: 263384
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)