Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         29   0.37 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.5  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 KKKHSSVLTKLILLQKNPYFYLYECSQCFYFLFL 305
           KK  +SVL K         F+LY   +C Y+LF+
Sbjct: 63  KKIKNSVLLKTSFDSNETIFFLYSLHRCVYYLFI 96


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 143 WNRSYLYIVTSLLRHTRHTFSSGISVNT 60
           W RSYL ++T L+ + +  F +G++ +T
Sbjct: 246 WVRSYLTLLTELITYVKTHFKTGLTWST 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,106
Number of Sequences: 5004
Number of extensions: 44110
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)