Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08f
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    28   6.4  
SB_50324| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-30)                 27   8.5  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 475 LDSYISVNLTITYSCLCTYLCLHNNL 398
           LD Y+ V+ T+ ++ L  Y C+H N+
Sbjct: 852 LDVYMFVSFTLVFASLIEYACVHYNI 877


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 246 VTVSI*LKQSYVFFFKSTEFMYLFSHN-FFIK 154
           +T S  + +SYV   K  EF+ ++SH+ FF+K
Sbjct: 767 LTTSETILESYVLALKKDEFLNIYSHDEFFLK 798


>SB_50324| Best HMM Match : 7tm_1 (HMM E-Value=9.7e-30)
          Length = 384

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 234 LILLQKNPYFYLYECSQCFYFLFLINM*IILKMLKNVN*Y*VIVKXXXXSIIF 392
           +++L K P+  L    Q FY LF +N  I+L     +N Y  +V+     I+F
Sbjct: 85  VLVLGKWPFSDLVCQIQGFYILFPVNASILLMAATAINRYFQVVRQNYYRILF 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,232
Number of Sequences: 59808
Number of extensions: 285577
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)