Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12i07r
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0186 - 41857468-41857759,41857856-41857977,41858148-418582... 174 5e-44
05_01_0357 - 2802437-2802511,2802594-2802692,2803215-2803280,280... 93 2e-19
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 30 2.3
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 29 3.0
02_04_0127 + 19992651-19993334,19993853-19993885,19994060-199941... 29 3.0
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 29 4.0
11_02_0049 - 7751779-7751925,7752046-7752189,7752398-7752489,775... 29 5.3
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 28 7.0
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 7.0
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 28 7.0
03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887... 28 7.0
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 28 7.0
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 28 9.2
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280... 28 9.2
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 28 9.2
>01_07_0186 -
41857468-41857759,41857856-41857977,41858148-41858269,
41858439-41858547,41860076-41860174,41860251-41860384,
41860645-41860732,41860913-41860959,41861626-41861692,
41861783-41862004
Length = 433
Score = 174 bits (424), Expect = 5e-44
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 1/197 (0%)
Frame = -2
Query: 733 APRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQ 554
A R+VAV K KPV ++ E Y+AG R FGENYV E KA P + E DI+WHFIGHLQ
Sbjct: 34 AVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTKA--PQLPE---DIRWHFIGHLQ 88
Query: 553 TNKINKLLGS-PGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGL 377
+NK+ LL + P L MVE VD+ K+A++L++ ++ L+V+VQVNTSGE++KSG+
Sbjct: 89 SNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDP--LKVLVQVNTSGEESKSGI 146
Query: 376 EPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDI 197
+P + +H+ CP+L F GLMTIG DY T ++ L+ C+ EVC+ +++
Sbjct: 147 DPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTP---ENFKALVNCKLEVCKAIDMPA 203
Query: 196 KDVELSMGMSSDFAHAI 146
+ ELSMGMS DF A+
Sbjct: 204 EQFELSMGMSGDFEQAV 220
>05_01_0357 -
2802437-2802511,2802594-2802692,2803215-2803280,
2803619-2803665,2804067-2804133,2805062-2805283
Length = 191
Score = 93.5 bits (222), Expect = 2e-19
Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -2
Query: 727 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 548
R+VAVSK KPV +I Y+AG R FGENYV EL DKAS + +DI+WHFIG+LQ+N
Sbjct: 36 RVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS-----QLPEDIEWHFIGNLQSN 90
Query: 547 KINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAK 386
K LL G P L MVE+VD +K+A+ L++ ++ ++ V N E K
Sbjct: 91 KARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQALANCRKEVCK 145
Score = 72.1 bits (169), Expect = 4e-13
Identities = 35/56 (62%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Frame = -2
Query: 244 LIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAIELGATTVRVGSTIFGAR--PPKN 83
L CR+EVC++L + + ELSMGMS+DF AIE+G+T VRVGSTIFGAR P KN
Sbjct: 136 LANCRKEVCKELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREYPKKN 191
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPN-PDYLCLIKCRQEVCEKLNLD 200
+E K NC F+G T Y+ P DY KCRQ+V + LNLD
Sbjct: 286 VEILKRKNGPFSNCMLRGFKGKFTYNGEQYEAMAAPQGADYH---KCRQDVVKALNLD 340
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPN-PDYLCLIKCRQEVCEKLNLD 200
+E K NC F G YD T P DY KCR +V + LNLD
Sbjct: 262 VEILKRKNGTFSNCMLRGFSGKYIYNGEQYDATAAPQGADYH---KCRDDVVKALNLD 316
>02_04_0127 +
19992651-19993334,19993853-19993885,19994060-19994128,
19994494-19994581,19994627-19995132,19995210-19995503,
19995557-19995906,19996020-19996456,19996718-19996743,
19996995-19997078
Length = 856
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 631 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 485
+S + +D ILE+ + + W+ G+ T+K N ++G +E + EK
Sbjct: 478 ISSREADIAILEEPEHLNWYHHGNRWTDKFNHVVGVVHTNYLEYIKREK 526
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -2
Query: 496 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILEN 332
D +K+ NK WL+ + LRVM A G E ET K +E+ L N
Sbjct: 626 DCDKVMIENNKLWLEVERLMMELRVMAHKKEVAANA-FGAEKAETMKELENHLMN 679
>11_02_0049 -
7751779-7751925,7752046-7752189,7752398-7752489,
7752745-7752811,7753148-7753264,7753318-7753462,
7753574-7753689,7753789-7753865,7753995-7754076,
7754180-7754317,7754781-7754999
Length = 447
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 575 PFNVFAFFQY*WITGFIT*FVYIV--FS-EVPLASIVSFHNKFD 697
P+ +F +++ W+ GF+ F+Y+V FS VP S V +HN D
Sbjct: 200 PYAIFHAYRWQWLGGFVALFIYMVTTFSLYVPDWSYV-YHNDGD 242
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 295 GQYDYDITKGPNPDYLC 245
G+YD TK PNPD LC
Sbjct: 527 GRYDSICTKPPNPDVLC 543
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 202 PNSTSHTLLACILLGTDSQDLVLW*YHSHTALWSSVPGNLGLDSFRECAQQLLLF 366
P+S S ++A + D+ L LW WS GNL + SF + LL+F
Sbjct: 221 PDSGSKCVVAATSMVKDAVKLALW--RPGMKSWSVCDGNLHMLSFGKFTTNLLVF 273
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 429 NLSFSFLYFNHCLFKLSANFSESTVSTINKPGEPSSLLILFVCKCPMK 572
NL SF SA F +S++ +I KP P+ +L +C C ++
Sbjct: 202 NLDASFSSRTRTASGSSAIFQKSSLKSIRKPYMPTQRKLLKLCNCSVE 249
>03_02_0494 -
8873285-8873777,8873926-8874275,8874842-8875108,
8875616-8875897
Length = 463
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 631 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 485
+SD +D +LE+ + + W+ G NK K++G +E V E+
Sbjct: 112 VSDDKADIAVLEEPEHLTWYHHGRRWKNKFRKVIGVVHTNYLEYVKRER 160
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 160 NLKTFPLITQHL*YPNSTSHTLLACI 237
N KTFP+ + HL N TS+ + A +
Sbjct: 522 NAKTFPIFSSHLFMSNGTSYDITAIV 547
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -2
Query: 739 QIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGH 560
Q+ RLVA+ K + ++ Q + N VNE D L + K++++H++ H
Sbjct: 229 QVLFRLVAIIKFLGKRSLAFRGSSDQLY---NDVNEFDLVMQDHLRHIQNKELQYHYLSH 285
Query: 559 LQTNKINKLLGS 524
N+++ L+ S
Sbjct: 286 KIQNELSSLMAS 297
>11_01_0368 +
2800597-2801037,2802282-2802314,2802789-2802876,
2802984-2803465,2803552-2803818,2803955-2804304,
2804396-2804945
Length = 736
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 631 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 485
+ K +D ILE+ + + W+ G T+K N ++G +E + EK
Sbjct: 366 IPSKEADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREK 414
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 490 EKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 365
+ L D L +KYRKEKER+ + ++ E+ + L+ E
Sbjct: 452 DDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAE 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,508
Number of Sequences: 37544
Number of extensions: 367019
Number of successful extensions: 981
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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