Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07r
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11930.2 68414.m01379 alanine racemase family protein contain...   207   7e-54
At1g11930.1 68414.m01378 alanine racemase family protein contain...   202   3e-52
At4g26860.1 68417.m03866 alanine racemase family protein contain...   199   1e-51
At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY) domain-c...    31   0.62 
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (...    31   0.83 
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (...    31   0.83 
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    29   4.4  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    29   4.4  
At4g13750.1 68417.m02134 expressed protein                             28   5.8  
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai...    28   5.8  
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    28   5.8  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    28   7.7  

>At1g11930.2 68414.m01379 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 255

 Score =  207 bits (505), Expect = 7e-54
 Identities = 114/212 (53%), Positives = 146/212 (68%), Gaps = 1/212 (0%)
 Frame = -2

Query: 727 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 548
           R+VAVSK KPV LI + Y+AGQR FGENYV E+ +KA  P + E   DI+WHFIG+LQ+N
Sbjct: 49  RVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKA--PQLPE---DIEWHFIGNLQSN 103

Query: 547 KINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP 371
           K+  LL G P L  VE+VD EK+A+ L++  +     ++ L+V VQVNTSGE +K G+EP
Sbjct: 104 KVKPLLSGVPNLVTVESVDDEKIANMLDR--VVGNIGRKPLKVFVQVNTSGEDSKFGVEP 161

Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKD 191
                  +H+ E C NL+F GLMTIG  DY  T  P  ++  L KCR EVC++L +  + 
Sbjct: 162 SGCVGLAKHVKEACSNLEFSGLMTIGMADY--TSTPE-NFKLLAKCRSEVCKELGIPEEQ 218

Query: 190 VELSMGMSSDFAHAIELGATTVRVGSTIFGAR 95
            ELSMGMS DF  AIELG+T VR+GSTIFGAR
Sbjct: 219 CELSMGMSGDFELAIELGSTNVRIGSTIFGAR 250


>At1g11930.1 68414.m01378 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 257

 Score =  202 bits (492), Expect = 3e-52
 Identities = 114/214 (53%), Positives = 146/214 (68%), Gaps = 3/214 (1%)
 Frame = -2

Query: 727 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 548
           R+VAVSK KPV LI + Y+AGQR FGENYV E+ +KA  P + E   DI+WHFIG+LQ+N
Sbjct: 49  RVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKA--PQLPE---DIEWHFIGNLQSN 103

Query: 547 KINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP 371
           K+  LL G P L  VE+VD EK+A+ L++  +     ++ L+V VQVNTSGE +K G+EP
Sbjct: 104 KVKPLLSGVPNLVTVESVDDEKIANMLDR--VVGNIGRKPLKVFVQVNTSGEDSKFGVEP 161

Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKD 191
                  +H+ E C NL+F GLMTIG  DY  T  P  ++  L KCR EVC++L +  + 
Sbjct: 162 SGCVGLAKHVKEACSNLEFSGLMTIGMADY--TSTPE-NFKLLAKCRSEVCKELGIPEEQ 218

Query: 190 VELSMGMSSDF--AHAIELGATTVRVGSTIFGAR 95
            ELSMGMS DF  A  IELG+T VR+GSTIFGAR
Sbjct: 219 CELSMGMSGDFELALQIELGSTNVRIGSTIFGAR 252


>At4g26860.1 68417.m03866 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 244

 Score =  199 bits (486), Expect = 1e-51
 Identities = 112/218 (51%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
 Frame = -2

Query: 727 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 548
           R++ VSK KPV LI + Y+AG R FGENYV E+ DKA  P + E   DI+WHF+GHLQ+N
Sbjct: 36  RVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKA--PQLPE---DIEWHFVGHLQSN 90

Query: 547 KINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP 371
           K   LL G P L MV  VD EK+A++L++      +    L+V+VQVNTSGE +KSG+EP
Sbjct: 91  KAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGRHP--LKVLVQVNTSGEVSKSGIEP 148

Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKD 191
               +   H+  +CPNL F GLMTIG  DY  T  P  ++  L  CR +VC+ L +    
Sbjct: 149 SSVVELARHVKHHCPNLVFSGLMTIGMPDY--TSTPE-NFRTLSNCRADVCKALGMAEDQ 205

Query: 190 VELSMGMSSDFAHAIELGATTVRVGSTIFGARP-PKNS 80
            ELSMGMS DF  AIE+G+T VRVGSTIFG R  PK +
Sbjct: 206 FELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYPKKT 243


>At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 427

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 529 GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP 371
           G  G F+ +++DS++L D+  ++ ++  +E+E LR        G    + + P
Sbjct: 55  GRKGFFLYDSIDSDELGDSDQREAMEENEEEEELRPTALYTVGGSDEFTFVSP 107


>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 639

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 631 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 485
           +S K +D  ILE+ + + W++ G   T+K N ++G      +E +  EK
Sbjct: 451 ISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREK 499


>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 808

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 631 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 485
           +S K +D  ILE+ + + W++ G   T+K N ++G      +E +  EK
Sbjct: 451 ISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREK 499


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 222 CVRS*IWISKMLSYQWECLQILHMLLN*AQLQFGLVLLFLEQG--RRKIHKSRCLEV 58
           C+   +W SK++  Q+ CLQ L  +L   ++++G + L  EQ   R+ +    CLEV
Sbjct: 42  CIEK-LWFSKLVQVQFWCLQTLQDVL---RVKYGSMSLD-EQSYVRKSVFSMACLEV 93


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = -2

Query: 505 ETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCP 326
           E ++ E L  NL+ Q LKY  E ERL+  ++     E+ +   E     K  +  +EN  
Sbjct: 361 EVLEQEIL--NLSNQMLKYELECERLKTQLE-----EEKRKQKEQENCIKEQQMKIENLN 413

Query: 325 NLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEV 221
           N          Q +  I     PD LC +    +V
Sbjct: 414 NFVTNSDFKRNQSEDFIISRKTPDGLCNVNDTSDV 448


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -2

Query: 727  RLVAVSKIKPVELIVEAYNA-----GQRHFGENYVNELSDKASDPLILEKCKDIKWHFI 566
            R   +S+++   L++  Y       G  HFGE Y N+++ K      L K  DI WH +
Sbjct: 1213 RKYIISELRSKALVLSNYGLKQLGEGSIHFGEEYGNQVNMKK-----LTKNLDISWHVV 1266


>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 415

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 361 TKAVEHILENCPNLDFQGLMTIGQYDYDITKG 266
           TKA E + ++CPNL  + L  +  YD   + G
Sbjct: 357 TKAYEDLKDDCPNLQSELLKAVAGYDDTSSSG 388


>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 490 EKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 365
           + L D L    +KYRKEKER+  + ++    E+    L+  E
Sbjct: 450 DDLRDKLQPLTMKYRKEKERIDEIRRLKQKREELMFSLQEAE 491


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 603 YWKNAKTLNGTSLDIYKQ 550
           +WK AKT NG  LD +KQ
Sbjct: 129 FWKLAKTCNGEKLDKWKQ 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,625
Number of Sequences: 28952
Number of extensions: 322712
Number of successful extensions: 1033
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)